Cargando…

Genetic sex determination assays in 53 mammalian species: Literature analysis and guidelines for reporting standardization

Erstwhile, sex was determined by observation, which is not always feasible. Nowadays, genetic methods are prevailing due to their accuracy, simplicity, low costs, and time‐efficiency. However, there is no comprehensive review enabling overview and development of the field. The studies are heterogene...

Descripción completa

Detalles Bibliográficos
Autores principales: Hrovatin, Karin, Kunej, Tanja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5773321/
https://www.ncbi.nlm.nih.gov/pubmed/29375774
http://dx.doi.org/10.1002/ece3.3707
_version_ 1783293547402756096
author Hrovatin, Karin
Kunej, Tanja
author_facet Hrovatin, Karin
Kunej, Tanja
author_sort Hrovatin, Karin
collection PubMed
description Erstwhile, sex was determined by observation, which is not always feasible. Nowadays, genetic methods are prevailing due to their accuracy, simplicity, low costs, and time‐efficiency. However, there is no comprehensive review enabling overview and development of the field. The studies are heterogeneous, lacking a standardized reporting strategy. Therefore, our aim was to collect genetic sexing assays for mammals and assemble them in a catalogue with unified terminology. Publications were extracted from online databases using key words such as sexing and molecular. The collected data were supplemented with species and gene IDs and the type of sex‐specific sequence variant (SSSV). We developed a catalogue and graphic presentation of diagnostic tests for molecular sex determination of mammals, based on 58 papers published from 2/1991 to 10/2016. The catalogue consists of five categories: species, genes, SSSVs, methods, and references. Based on the analysis of published literature, we propose minimal requirements for reporting, consisting of: species scientific name and ID, genetic sequence with name and ID, SSSV, methodology, genomic coordinates (e.g., restriction sites, SSSVs), amplification system, and description of detected amplicon and controls. The present study summarizes vast knowledge that has up to now been scattered across databases, representing the first step toward standardization regarding molecular sexing, enabling a better overview of existing tests and facilitating planned designs of novel tests. The project is ongoing; collecting additional publications, optimizing field development, and standardizing data presentation are needed.
format Online
Article
Text
id pubmed-5773321
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-57733212018-01-26 Genetic sex determination assays in 53 mammalian species: Literature analysis and guidelines for reporting standardization Hrovatin, Karin Kunej, Tanja Ecol Evol Original Research Erstwhile, sex was determined by observation, which is not always feasible. Nowadays, genetic methods are prevailing due to their accuracy, simplicity, low costs, and time‐efficiency. However, there is no comprehensive review enabling overview and development of the field. The studies are heterogeneous, lacking a standardized reporting strategy. Therefore, our aim was to collect genetic sexing assays for mammals and assemble them in a catalogue with unified terminology. Publications were extracted from online databases using key words such as sexing and molecular. The collected data were supplemented with species and gene IDs and the type of sex‐specific sequence variant (SSSV). We developed a catalogue and graphic presentation of diagnostic tests for molecular sex determination of mammals, based on 58 papers published from 2/1991 to 10/2016. The catalogue consists of five categories: species, genes, SSSVs, methods, and references. Based on the analysis of published literature, we propose minimal requirements for reporting, consisting of: species scientific name and ID, genetic sequence with name and ID, SSSV, methodology, genomic coordinates (e.g., restriction sites, SSSVs), amplification system, and description of detected amplicon and controls. The present study summarizes vast knowledge that has up to now been scattered across databases, representing the first step toward standardization regarding molecular sexing, enabling a better overview of existing tests and facilitating planned designs of novel tests. The project is ongoing; collecting additional publications, optimizing field development, and standardizing data presentation are needed. John Wiley and Sons Inc. 2017-12-13 /pmc/articles/PMC5773321/ /pubmed/29375774 http://dx.doi.org/10.1002/ece3.3707 Text en © 2017 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Hrovatin, Karin
Kunej, Tanja
Genetic sex determination assays in 53 mammalian species: Literature analysis and guidelines for reporting standardization
title Genetic sex determination assays in 53 mammalian species: Literature analysis and guidelines for reporting standardization
title_full Genetic sex determination assays in 53 mammalian species: Literature analysis and guidelines for reporting standardization
title_fullStr Genetic sex determination assays in 53 mammalian species: Literature analysis and guidelines for reporting standardization
title_full_unstemmed Genetic sex determination assays in 53 mammalian species: Literature analysis and guidelines for reporting standardization
title_short Genetic sex determination assays in 53 mammalian species: Literature analysis and guidelines for reporting standardization
title_sort genetic sex determination assays in 53 mammalian species: literature analysis and guidelines for reporting standardization
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5773321/
https://www.ncbi.nlm.nih.gov/pubmed/29375774
http://dx.doi.org/10.1002/ece3.3707
work_keys_str_mv AT hrovatinkarin geneticsexdeterminationassaysin53mammalianspeciesliteratureanalysisandguidelinesforreportingstandardization
AT kunejtanja geneticsexdeterminationassaysin53mammalianspeciesliteratureanalysisandguidelinesforreportingstandardization