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A Novel Modeling in Mathematical Biology for Classification of Signal Peptides
The molecular structure of macromolecules in living cells is ambiguous unless we classify them in a scientific manner. Signal peptides are of vital importance in determining the behavior of newly formed proteins towards their destined path in cellular and extracellular location in both eukaryotes an...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5773712/ https://www.ncbi.nlm.nih.gov/pubmed/29348418 http://dx.doi.org/10.1038/s41598-018-19491-y |
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author | Ehsan, Asma Mahmood, Khalid Khan, Yaser Daanial Khan, Sher Afzal Chou, Kuo-Chen |
author_facet | Ehsan, Asma Mahmood, Khalid Khan, Yaser Daanial Khan, Sher Afzal Chou, Kuo-Chen |
author_sort | Ehsan, Asma |
collection | PubMed |
description | The molecular structure of macromolecules in living cells is ambiguous unless we classify them in a scientific manner. Signal peptides are of vital importance in determining the behavior of newly formed proteins towards their destined path in cellular and extracellular location in both eukaryotes and prokaryotes. In the present research work, a novel method is offered to foreknow the behavior of signal peptides and determine their cleavage site. The proposed model employs neural networks using isolated sets of prokaryote and eukaryote primary sequences. Protein sequences are classified as secretory or non-secretory in order to investigate secretory proteins and their signal peptides. In comparison with the previous prediction tools, the proposed algorithm is more rigorous, well-organized, significantly appropriate and highly accurate for the examination of signal peptides even in extensive collection of protein sequences. |
format | Online Article Text |
id | pubmed-5773712 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57737122018-01-26 A Novel Modeling in Mathematical Biology for Classification of Signal Peptides Ehsan, Asma Mahmood, Khalid Khan, Yaser Daanial Khan, Sher Afzal Chou, Kuo-Chen Sci Rep Article The molecular structure of macromolecules in living cells is ambiguous unless we classify them in a scientific manner. Signal peptides are of vital importance in determining the behavior of newly formed proteins towards their destined path in cellular and extracellular location in both eukaryotes and prokaryotes. In the present research work, a novel method is offered to foreknow the behavior of signal peptides and determine their cleavage site. The proposed model employs neural networks using isolated sets of prokaryote and eukaryote primary sequences. Protein sequences are classified as secretory or non-secretory in order to investigate secretory proteins and their signal peptides. In comparison with the previous prediction tools, the proposed algorithm is more rigorous, well-organized, significantly appropriate and highly accurate for the examination of signal peptides even in extensive collection of protein sequences. Nature Publishing Group UK 2018-01-18 /pmc/articles/PMC5773712/ /pubmed/29348418 http://dx.doi.org/10.1038/s41598-018-19491-y Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Ehsan, Asma Mahmood, Khalid Khan, Yaser Daanial Khan, Sher Afzal Chou, Kuo-Chen A Novel Modeling in Mathematical Biology for Classification of Signal Peptides |
title | A Novel Modeling in Mathematical Biology for Classification of Signal Peptides |
title_full | A Novel Modeling in Mathematical Biology for Classification of Signal Peptides |
title_fullStr | A Novel Modeling in Mathematical Biology for Classification of Signal Peptides |
title_full_unstemmed | A Novel Modeling in Mathematical Biology for Classification of Signal Peptides |
title_short | A Novel Modeling in Mathematical Biology for Classification of Signal Peptides |
title_sort | novel modeling in mathematical biology for classification of signal peptides |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5773712/ https://www.ncbi.nlm.nih.gov/pubmed/29348418 http://dx.doi.org/10.1038/s41598-018-19491-y |
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