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Extension of the viral ecology in humans using viral profile hidden Markov models

When human samples are sequenced, many assembled contigs are “unknown”, as conventional alignments find no similarity to known sequences. Hidden Markov models (HMM) exploit the positions of specific nucleotides in protein-encoding codons in various microbes. The algorithm HMMER3 implements HMM using...

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Detalles Bibliográficos
Autores principales:	Bzhalava, Zurab, Hultin, Emilie, Dillner, Joakim
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5774701/ https://www.ncbi.nlm.nih.gov/pubmed/29351302 http://dx.doi.org/10.1371/journal.pone.0190938

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