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Influence of multiplicative stochastic variation on translational elongation rates

Experimental data indicate that stochastic effects exerted at the level of translation contribute substantially to the variation in abundance of proteins expressed at moderate to high levels. This study analyzes the theoretical consequences of fluctuations in residue-specific elongation rates during...

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Detalles Bibliográficos
Autores principales: Datta, Sandip, Seed, Brian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5774726/
https://www.ncbi.nlm.nih.gov/pubmed/29351322
http://dx.doi.org/10.1371/journal.pone.0191152
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author Datta, Sandip
Seed, Brian
author_facet Datta, Sandip
Seed, Brian
author_sort Datta, Sandip
collection PubMed
description Experimental data indicate that stochastic effects exerted at the level of translation contribute substantially to the variation in abundance of proteins expressed at moderate to high levels. This study analyzes the theoretical consequences of fluctuations in residue-specific elongation rates during translation. A simple analytical framework shows that rate variation during elongation gives rise to protein production rates that consist of sums of products of random variables. Simulations show that because the contribution to total variation of products of random variables greatly exceeds that of sums of random variables, the overall distribution exhibits approximately log-normal behavior. Empirical fits of the data can be satisfied by either sums of log-normal distributions, or sums of log-normal and log-logistic distributions. Elongation rate stochastic variation offers an accounting for a major component of biological variation. The analysis provided here highlights a probability distribution that is a natural extension of the Poisson and has broad applicability to many types of multiplicative noise processes.
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spelling pubmed-57747262018-02-05 Influence of multiplicative stochastic variation on translational elongation rates Datta, Sandip Seed, Brian PLoS One Research Article Experimental data indicate that stochastic effects exerted at the level of translation contribute substantially to the variation in abundance of proteins expressed at moderate to high levels. This study analyzes the theoretical consequences of fluctuations in residue-specific elongation rates during translation. A simple analytical framework shows that rate variation during elongation gives rise to protein production rates that consist of sums of products of random variables. Simulations show that because the contribution to total variation of products of random variables greatly exceeds that of sums of random variables, the overall distribution exhibits approximately log-normal behavior. Empirical fits of the data can be satisfied by either sums of log-normal distributions, or sums of log-normal and log-logistic distributions. Elongation rate stochastic variation offers an accounting for a major component of biological variation. The analysis provided here highlights a probability distribution that is a natural extension of the Poisson and has broad applicability to many types of multiplicative noise processes. Public Library of Science 2018-01-19 /pmc/articles/PMC5774726/ /pubmed/29351322 http://dx.doi.org/10.1371/journal.pone.0191152 Text en © 2018 Datta, Seed http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Datta, Sandip
Seed, Brian
Influence of multiplicative stochastic variation on translational elongation rates
title Influence of multiplicative stochastic variation on translational elongation rates
title_full Influence of multiplicative stochastic variation on translational elongation rates
title_fullStr Influence of multiplicative stochastic variation on translational elongation rates
title_full_unstemmed Influence of multiplicative stochastic variation on translational elongation rates
title_short Influence of multiplicative stochastic variation on translational elongation rates
title_sort influence of multiplicative stochastic variation on translational elongation rates
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5774726/
https://www.ncbi.nlm.nih.gov/pubmed/29351322
http://dx.doi.org/10.1371/journal.pone.0191152
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