Cargando…

Applications of random forest feature selection for fine‐scale genetic population assignment

Genetic population assignment used to inform wildlife management and conservation efforts requires panels of highly informative genetic markers and sensitive assignment tests. We explored the utility of machine‐learning algorithms (random forest, regularized random forest and guided regularized rand...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sylvester, Emma V. A., Bentzen, Paul, Bradbury, Ian R., Clément, Marie, Pearce, Jon, Horne, John, Beiko, Robert G.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	John Wiley and Sons Inc. 2017
Materias:	Original Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5775496/ https://www.ncbi.nlm.nih.gov/pubmed/29387152 http://dx.doi.org/10.1111/eva.12524

Ejemplares similares

Genotyping‐by‐sequencing of genome‐wide microsatellite loci reveals fine‐scale harvest composition in a coastal Atlantic salmon fishery
por: Bradbury, Ian R., et al.
Publicado: (2018)

PMERGE: Computational filtering of paralogous sequences from RAD‐seq data
por: Nadukkalam Ravindran, Praveen, et al.
Publicado: (2018)

SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles
por: Porter, Michael S., et al.
Publicado: (2013)

Resolving fine‐scale population structure and fishery exploitation using sequenced microsatellites in a northern fish
por: Layton, Kara K. S., et al.
Publicado: (2020)

Rapid identification of high-confidence taxonomic assignments for metagenomic data
por: MacDonald, Norman J., et al.
Publicado: (2012)

Range-wide parallel climate-associated genomic clines in Atlantic salmon
por: Jeffery, Nicholas W., et al.
Publicado: (2017)

The fine‐scale genetic structure and selection signals of Chinese indigenous pigs
por: Huang, Min, et al.
Publicado: (2019)

Fine-Scale Genetic Structure and Cryptic Associations Reveal Evidence of Kin-Based Sociality in the African Forest Elephant
por: Schuttler, Stephanie G., et al.
Publicado: (2014)

GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA
por: Beiko, Robert G, et al.
Publicado: (2005)

Fine-Scale Genetic Structure in Finland
por: Kerminen, Sini, et al.
Publicado: (2017)

Fine-scale spatial genetic structure of Dalbergia nigra (Fabaceae), a threatened and endemic tree of the Brazilian Atlantic Forest
por: de Oliveira Buzatti, Renata Santiago, et al.
Publicado: (2012)

Differences in fine-scale spatial genetic structure across the distribution range of the distylous forest herb Pulmonaria officinalis (Boraginaceae)
por: Meeus, Sofie, et al.
Publicado: (2013)

Multi-scale comparison of the fine particle removal capacity of urban forests and wetlands
por: Zhang, Zhenming, et al.
Publicado: (2017)

Estimating the relative fitness of escaped farmed salmon offspring in the wild and modelling the consequences of invasion for wild populations
por: Sylvester, Emma V. A., et al.
Publicado: (2019)

Fine‐scale habitat selection by sympatric Canada lynx and bobcat
por: Morin, Samantha J., et al.
Publicado: (2020)

Fine‐scale environmentally associated spatial structure of lumpfish (Cyclopterus lumpus) across the Northwest Atlantic
por: Langille, Barbara L., et al.
Publicado: (2023)

Fine scale human genetic structure in three regions of Cameroon reveals episodic diversifying selection
por: Esoh, Kevin K., et al.
Publicado: (2021)

Dispersal, Mating Events and Fine-Scale Genetic Structure in the Lesser Flat-Headed Bats
por: Hua, Panyu, et al.
Publicado: (2013)

Genet assignment and population structure analysis in a clonal forest-floor herb, Cardamine leucantha, using RAD-seq
por: Tsujimoto, Michiaki, et al.
Publicado: (2019)

Large-scale assignment of orthology: back to phylogenetics?
por: Gabaldón, Toni
Publicado: (2008)

Is there coordination of leaf and fine root traits at local scales? A test in temperate forest swamps
por: Hu, Yu‐Kun, et al.
Publicado: (2019)

Distance Correlation-Based Feature Selection in Random Forest
por: Ratnasingam, Suthakaran, et al.
Publicado: (2023)

The fine-scale genetic structure and evolution of the Japanese population
por: Takeuchi, Fumihiko, et al.
Publicado: (2017)

Contrasting fine-scale genetic structure of two sympatric clonal plants in an alpine swampy meadow featured by tussocks
por: Ning, Yu, et al.
Publicado: (2018)

Population genetic structure and connectivity of a riparian selfing herb Caulokaempferia coenobialis at a fine-scale geographic level in subtropical monsoon forest
por: Fu, Qiong, et al.
Publicado: (2021)

Blue whales increase feeding rates at fine-scale ocean features
por: Fahlbusch, James A., et al.
Publicado: (2022)

Genomic scale sub-family assignment of protein domains
por: Gough, Julian
Publicado: (2006)

Integration, scaling, space-group assignment and post-refinement
por: Kabsch, Wolfgang
Publicado: (2010)

Fine-scale selection by ovipositing females increases egg survival
por: Gall, Brian G, et al.
Publicado: (2012)

The National Library of Medicine indexer assignment dataset: A new large‐scale dataset for reviewer assignment research
por: Rae, Alastair R., et al.
Publicado: (2022)

Prediction of Protein Cleavage Site with Feature Selection by Random Forest
por: Li, Bi-Qing, et al.
Publicado: (2012)

On Nature’s Strategy for Assigning Genetic Code Multiplicity
por: Gardini, Simone, et al.
Publicado: (2016)

Towards a fine-scale picture of European genetic diversity
por: Nothnagel, Michael
Publicado: (2020)

European Invasion of North American Pinus strobus at Large and Fine Scales: High Genetic Diversity and Fine-Scale Genetic Clustering over Time in the Adventive Range
por: Mandák, Bohumil, et al.
Publicado: (2013)

Modular chromosome rearrangements reveal parallel and nonparallel adaptation in a marine fish
por: Kess, Tony, et al.
Publicado: (2020)

The fine-scale recombination rate variation and associations with genomic features in a butterfly
por: Palahí i Torres, Aleix, et al.
Publicado: (2023)

Spatio-temporal processes drive fine-scale genetic structure in an otherwise panmictic seabird population
por: Garrett, Lucy J. H., et al.
Publicado: (2020)

Bayesian Selection of Nucleotide Substitution Models and Their Site Assignments
por: Wu, Chieh-Hsi, et al.
Publicado: (2013)

Unravelling the age of fine roots of temperate and boreal forests
por: Solly, Emily F., et al.
Publicado: (2018)

Fine root decomposition in forest ecosystems: an ecological perspective
por: Saha, Sudipta, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_r7043f26t94g16ks0n1b5aoa6b