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Inclusion of edaphic predictors for enhancement of models to determine distribution of soil-transmitted helminths: the case of Zimbabwe
BACKGROUND: Reliable mapping of soil-transmitted helminth (STH) parasites requires rigorous statistical and machine learning algorithms capable of integrating the combined influence of several determinants to predict distributions. This study tested whether combining edaphic predictors with relevant...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5775612/ https://www.ncbi.nlm.nih.gov/pubmed/29351762 http://dx.doi.org/10.1186/s13071-017-2586-6 |
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author | Midzi, Nicholas Kavhu, Blessing Manangazira, Portia Phiri, Isaac Mutambu, Susan L. Tshuma, Cremants Chimbari, Moses J. Munyati, Shungu Midzi, Stanely M. Charimari, Lincon Ncube, Anatoria Mutsaka-Makuvaza, Masceline J. Soko, White Madzima, Emmanuel Hlerema, Gibson Mbedzi, Joel Mhlanga, Gibson Masocha, Mhosisi |
author_facet | Midzi, Nicholas Kavhu, Blessing Manangazira, Portia Phiri, Isaac Mutambu, Susan L. Tshuma, Cremants Chimbari, Moses J. Munyati, Shungu Midzi, Stanely M. Charimari, Lincon Ncube, Anatoria Mutsaka-Makuvaza, Masceline J. Soko, White Madzima, Emmanuel Hlerema, Gibson Mbedzi, Joel Mhlanga, Gibson Masocha, Mhosisi |
author_sort | Midzi, Nicholas |
collection | PubMed |
description | BACKGROUND: Reliable mapping of soil-transmitted helminth (STH) parasites requires rigorous statistical and machine learning algorithms capable of integrating the combined influence of several determinants to predict distributions. This study tested whether combining edaphic predictors with relevant environmental predictors improves model performance when predicting the distribution of STH, Ascaris lumbricoides and hookworms at a national scale in Zimbabwe. METHODS: Geo-referenced parasitological data obtained from a 2010/2011 national survey indicating a confirmed presence or absence of STH among school children aged 10–15 years was used to calibrate ten species distribution models (SDMs). The performance of SDMs calibrated with a set of environmental and edaphic variables was compared to that of SDMs calibrated with environmental variables only. Model performance was evaluated using the true skill statistic and receiver operating characteristic curve. RESULTS: Results show a significant improvement in model performance for both A. lumbricoides and hookworms for all ten SDMs after edaphic variables were combined with environmental variables in the modelling of the geographical distribution of the two STHs at national scale. Using the top three performing models, a consensus prediction was developed to generate the first continuous maps of the potential distribution of the two STHs in Zimbabwe. CONCLUSIONS: The findings from this study demonstrate significant model improvement if relevant edaphic variables are included in model calibration resulting in more accurate mapping of STH. The results also provide spatially-explicit information to aid targeted control of STHs in Zimbabwe and other countries with STH burden. |
format | Online Article Text |
id | pubmed-5775612 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-57756122018-01-31 Inclusion of edaphic predictors for enhancement of models to determine distribution of soil-transmitted helminths: the case of Zimbabwe Midzi, Nicholas Kavhu, Blessing Manangazira, Portia Phiri, Isaac Mutambu, Susan L. Tshuma, Cremants Chimbari, Moses J. Munyati, Shungu Midzi, Stanely M. Charimari, Lincon Ncube, Anatoria Mutsaka-Makuvaza, Masceline J. Soko, White Madzima, Emmanuel Hlerema, Gibson Mbedzi, Joel Mhlanga, Gibson Masocha, Mhosisi Parasit Vectors Research BACKGROUND: Reliable mapping of soil-transmitted helminth (STH) parasites requires rigorous statistical and machine learning algorithms capable of integrating the combined influence of several determinants to predict distributions. This study tested whether combining edaphic predictors with relevant environmental predictors improves model performance when predicting the distribution of STH, Ascaris lumbricoides and hookworms at a national scale in Zimbabwe. METHODS: Geo-referenced parasitological data obtained from a 2010/2011 national survey indicating a confirmed presence or absence of STH among school children aged 10–15 years was used to calibrate ten species distribution models (SDMs). The performance of SDMs calibrated with a set of environmental and edaphic variables was compared to that of SDMs calibrated with environmental variables only. Model performance was evaluated using the true skill statistic and receiver operating characteristic curve. RESULTS: Results show a significant improvement in model performance for both A. lumbricoides and hookworms for all ten SDMs after edaphic variables were combined with environmental variables in the modelling of the geographical distribution of the two STHs at national scale. Using the top three performing models, a consensus prediction was developed to generate the first continuous maps of the potential distribution of the two STHs in Zimbabwe. CONCLUSIONS: The findings from this study demonstrate significant model improvement if relevant edaphic variables are included in model calibration resulting in more accurate mapping of STH. The results also provide spatially-explicit information to aid targeted control of STHs in Zimbabwe and other countries with STH burden. BioMed Central 2018-01-19 /pmc/articles/PMC5775612/ /pubmed/29351762 http://dx.doi.org/10.1186/s13071-017-2586-6 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Midzi, Nicholas Kavhu, Blessing Manangazira, Portia Phiri, Isaac Mutambu, Susan L. Tshuma, Cremants Chimbari, Moses J. Munyati, Shungu Midzi, Stanely M. Charimari, Lincon Ncube, Anatoria Mutsaka-Makuvaza, Masceline J. Soko, White Madzima, Emmanuel Hlerema, Gibson Mbedzi, Joel Mhlanga, Gibson Masocha, Mhosisi Inclusion of edaphic predictors for enhancement of models to determine distribution of soil-transmitted helminths: the case of Zimbabwe |
title | Inclusion of edaphic predictors for enhancement of models to determine distribution of soil-transmitted helminths: the case of Zimbabwe |
title_full | Inclusion of edaphic predictors for enhancement of models to determine distribution of soil-transmitted helminths: the case of Zimbabwe |
title_fullStr | Inclusion of edaphic predictors for enhancement of models to determine distribution of soil-transmitted helminths: the case of Zimbabwe |
title_full_unstemmed | Inclusion of edaphic predictors for enhancement of models to determine distribution of soil-transmitted helminths: the case of Zimbabwe |
title_short | Inclusion of edaphic predictors for enhancement of models to determine distribution of soil-transmitted helminths: the case of Zimbabwe |
title_sort | inclusion of edaphic predictors for enhancement of models to determine distribution of soil-transmitted helminths: the case of zimbabwe |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5775612/ https://www.ncbi.nlm.nih.gov/pubmed/29351762 http://dx.doi.org/10.1186/s13071-017-2586-6 |
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