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Core promoter information content correlates with optimal growth temperature
The subtle mechanisms by which protein-DNA interactions remain functional across a wide range of temperatures are largely unknown. In this work, we manually curated available information relating fully sequenced archaeal genomes with organism growth temperatures. We built a motif that represents the...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5777992/ https://www.ncbi.nlm.nih.gov/pubmed/29358630 http://dx.doi.org/10.1038/s41598-018-19495-8 |
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author | Aptekmann, Ariel A. Nadra, Alejandro D. |
author_facet | Aptekmann, Ariel A. Nadra, Alejandro D. |
author_sort | Aptekmann, Ariel A. |
collection | PubMed |
description | The subtle mechanisms by which protein-DNA interactions remain functional across a wide range of temperatures are largely unknown. In this work, we manually curated available information relating fully sequenced archaeal genomes with organism growth temperatures. We built a motif that represents the core promoter of each species and calculated its information content. We then studied the relation between optimal growth temperature (OGT) and information content (IC) in the promoter region.We found a positive correlation between G + C content and OGT in tRNA regions and not in overall genome. Furthermore, we found that there is a positive correlation between information content and optimal growth temperatures in Archaea. This can’t be explained by an increased C+G composition nor by other obvious mechanisms. These findings suggest that increased information content could produce a positive fitness in organisms living at high temperatures. We suggest that molecular information theory may need to be adapted for hyperthermophiles. |
format | Online Article Text |
id | pubmed-5777992 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57779922018-01-31 Core promoter information content correlates with optimal growth temperature Aptekmann, Ariel A. Nadra, Alejandro D. Sci Rep Article The subtle mechanisms by which protein-DNA interactions remain functional across a wide range of temperatures are largely unknown. In this work, we manually curated available information relating fully sequenced archaeal genomes with organism growth temperatures. We built a motif that represents the core promoter of each species and calculated its information content. We then studied the relation between optimal growth temperature (OGT) and information content (IC) in the promoter region.We found a positive correlation between G + C content and OGT in tRNA regions and not in overall genome. Furthermore, we found that there is a positive correlation between information content and optimal growth temperatures in Archaea. This can’t be explained by an increased C+G composition nor by other obvious mechanisms. These findings suggest that increased information content could produce a positive fitness in organisms living at high temperatures. We suggest that molecular information theory may need to be adapted for hyperthermophiles. Nature Publishing Group UK 2018-01-22 /pmc/articles/PMC5777992/ /pubmed/29358630 http://dx.doi.org/10.1038/s41598-018-19495-8 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Aptekmann, Ariel A. Nadra, Alejandro D. Core promoter information content correlates with optimal growth temperature |
title | Core promoter information content correlates with optimal growth temperature |
title_full | Core promoter information content correlates with optimal growth temperature |
title_fullStr | Core promoter information content correlates with optimal growth temperature |
title_full_unstemmed | Core promoter information content correlates with optimal growth temperature |
title_short | Core promoter information content correlates with optimal growth temperature |
title_sort | core promoter information content correlates with optimal growth temperature |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5777992/ https://www.ncbi.nlm.nih.gov/pubmed/29358630 http://dx.doi.org/10.1038/s41598-018-19495-8 |
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