Cargando…
Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73)
In longitudinal clinical studies, methodologies available for the analysis of multivariate data with multivariate methods are relatively limited. Here, we present Consensus Clustering (CClust) a new computational method based on clustering of time profiles and posterior identification of correlation...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5780503/ https://www.ncbi.nlm.nih.gov/pubmed/29362412 http://dx.doi.org/10.1038/s41598-017-19059-2 |
_version_ | 1783294753830338560 |
---|---|
author | Lauria, Mario Persico, Maria Dordevic, Nikola Cominetti, Ornella Matone, Alice Hosking, Joanne Jeffery, Alison Pinkney, Jonathan Da Silva, Laeticia Priami, Corrado Montoliu, Ivan Martin, François-Pierre |
author_facet | Lauria, Mario Persico, Maria Dordevic, Nikola Cominetti, Ornella Matone, Alice Hosking, Joanne Jeffery, Alison Pinkney, Jonathan Da Silva, Laeticia Priami, Corrado Montoliu, Ivan Martin, François-Pierre |
author_sort | Lauria, Mario |
collection | PubMed |
description | In longitudinal clinical studies, methodologies available for the analysis of multivariate data with multivariate methods are relatively limited. Here, we present Consensus Clustering (CClust) a new computational method based on clustering of time profiles and posterior identification of correlation between clusters and predictors. Subjects are first clustered in groups according to a response variable temporal profile, using a robust consensus-based strategy. To discover which of the remaining variables are associated with the resulting groups, a non-parametric hypothesis test is performed between groups at every time point, and then the results are aggregated according to the Fisher method. Our approach is tested through its application to the EarlyBird cohort database, which contains temporal variations of clinical, metabolic, and anthropometric profiles in a population of 150 children followed-up annually from age 5 to age 16. Our results show that our consensus-based method is able to overcome the problem of the approach-dependent results produced by current clustering algorithms, producing groups defined according to Insulin Resistance (IR) and biological age (Tanner Score). Moreover, it provides meaningful biological results confirmed by hypothesis testing with most of the main clinical variables. These results position CClust as a valid alternative for the analysis of multivariate longitudinal data. |
format | Online Article Text |
id | pubmed-5780503 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57805032018-02-06 Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73) Lauria, Mario Persico, Maria Dordevic, Nikola Cominetti, Ornella Matone, Alice Hosking, Joanne Jeffery, Alison Pinkney, Jonathan Da Silva, Laeticia Priami, Corrado Montoliu, Ivan Martin, François-Pierre Sci Rep Article In longitudinal clinical studies, methodologies available for the analysis of multivariate data with multivariate methods are relatively limited. Here, we present Consensus Clustering (CClust) a new computational method based on clustering of time profiles and posterior identification of correlation between clusters and predictors. Subjects are first clustered in groups according to a response variable temporal profile, using a robust consensus-based strategy. To discover which of the remaining variables are associated with the resulting groups, a non-parametric hypothesis test is performed between groups at every time point, and then the results are aggregated according to the Fisher method. Our approach is tested through its application to the EarlyBird cohort database, which contains temporal variations of clinical, metabolic, and anthropometric profiles in a population of 150 children followed-up annually from age 5 to age 16. Our results show that our consensus-based method is able to overcome the problem of the approach-dependent results produced by current clustering algorithms, producing groups defined according to Insulin Resistance (IR) and biological age (Tanner Score). Moreover, it provides meaningful biological results confirmed by hypothesis testing with most of the main clinical variables. These results position CClust as a valid alternative for the analysis of multivariate longitudinal data. Nature Publishing Group UK 2018-01-23 /pmc/articles/PMC5780503/ /pubmed/29362412 http://dx.doi.org/10.1038/s41598-017-19059-2 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Lauria, Mario Persico, Maria Dordevic, Nikola Cominetti, Ornella Matone, Alice Hosking, Joanne Jeffery, Alison Pinkney, Jonathan Da Silva, Laeticia Priami, Corrado Montoliu, Ivan Martin, François-Pierre Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73) |
title | Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73) |
title_full | Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73) |
title_fullStr | Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73) |
title_full_unstemmed | Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73) |
title_short | Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73) |
title_sort | consensus clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (earlybird 73) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5780503/ https://www.ncbi.nlm.nih.gov/pubmed/29362412 http://dx.doi.org/10.1038/s41598-017-19059-2 |
work_keys_str_mv | AT lauriamario consensusclusteringoftemporalprofilesfortheidentificationofmetabolicmarkersofprediabetesinchildhoodearlybird73 AT persicomaria consensusclusteringoftemporalprofilesfortheidentificationofmetabolicmarkersofprediabetesinchildhoodearlybird73 AT dordevicnikola consensusclusteringoftemporalprofilesfortheidentificationofmetabolicmarkersofprediabetesinchildhoodearlybird73 AT cominettiornella consensusclusteringoftemporalprofilesfortheidentificationofmetabolicmarkersofprediabetesinchildhoodearlybird73 AT matonealice consensusclusteringoftemporalprofilesfortheidentificationofmetabolicmarkersofprediabetesinchildhoodearlybird73 AT hoskingjoanne consensusclusteringoftemporalprofilesfortheidentificationofmetabolicmarkersofprediabetesinchildhoodearlybird73 AT jefferyalison consensusclusteringoftemporalprofilesfortheidentificationofmetabolicmarkersofprediabetesinchildhoodearlybird73 AT pinkneyjonathan consensusclusteringoftemporalprofilesfortheidentificationofmetabolicmarkersofprediabetesinchildhoodearlybird73 AT dasilvalaeticia consensusclusteringoftemporalprofilesfortheidentificationofmetabolicmarkersofprediabetesinchildhoodearlybird73 AT priamicorrado consensusclusteringoftemporalprofilesfortheidentificationofmetabolicmarkersofprediabetesinchildhoodearlybird73 AT montoliuivan consensusclusteringoftemporalprofilesfortheidentificationofmetabolicmarkersofprediabetesinchildhoodearlybird73 AT martinfrancoispierre consensusclusteringoftemporalprofilesfortheidentificationofmetabolicmarkersofprediabetesinchildhoodearlybird73 |