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Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73)

In longitudinal clinical studies, methodologies available for the analysis of multivariate data with multivariate methods are relatively limited. Here, we present Consensus Clustering (CClust) a new computational method based on clustering of time profiles and posterior identification of correlation...

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Autores principales: Lauria, Mario, Persico, Maria, Dordevic, Nikola, Cominetti, Ornella, Matone, Alice, Hosking, Joanne, Jeffery, Alison, Pinkney, Jonathan, Da Silva, Laeticia, Priami, Corrado, Montoliu, Ivan, Martin, François-Pierre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5780503/
https://www.ncbi.nlm.nih.gov/pubmed/29362412
http://dx.doi.org/10.1038/s41598-017-19059-2
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author Lauria, Mario
Persico, Maria
Dordevic, Nikola
Cominetti, Ornella
Matone, Alice
Hosking, Joanne
Jeffery, Alison
Pinkney, Jonathan
Da Silva, Laeticia
Priami, Corrado
Montoliu, Ivan
Martin, François-Pierre
author_facet Lauria, Mario
Persico, Maria
Dordevic, Nikola
Cominetti, Ornella
Matone, Alice
Hosking, Joanne
Jeffery, Alison
Pinkney, Jonathan
Da Silva, Laeticia
Priami, Corrado
Montoliu, Ivan
Martin, François-Pierre
author_sort Lauria, Mario
collection PubMed
description In longitudinal clinical studies, methodologies available for the analysis of multivariate data with multivariate methods are relatively limited. Here, we present Consensus Clustering (CClust) a new computational method based on clustering of time profiles and posterior identification of correlation between clusters and predictors. Subjects are first clustered in groups according to a response variable temporal profile, using a robust consensus-based strategy. To discover which of the remaining variables are associated with the resulting groups, a non-parametric hypothesis test is performed between groups at every time point, and then the results are aggregated according to the Fisher method. Our approach is tested through its application to the EarlyBird cohort database, which contains temporal variations of clinical, metabolic, and anthropometric profiles in a population of 150 children followed-up annually from age 5 to age 16. Our results show that our consensus-based method is able to overcome the problem of the approach-dependent results produced by current clustering algorithms, producing groups defined according to Insulin Resistance (IR) and biological age (Tanner Score). Moreover, it provides meaningful biological results confirmed by hypothesis testing with most of the main clinical variables. These results position CClust as a valid alternative for the analysis of multivariate longitudinal data.
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spelling pubmed-57805032018-02-06 Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73) Lauria, Mario Persico, Maria Dordevic, Nikola Cominetti, Ornella Matone, Alice Hosking, Joanne Jeffery, Alison Pinkney, Jonathan Da Silva, Laeticia Priami, Corrado Montoliu, Ivan Martin, François-Pierre Sci Rep Article In longitudinal clinical studies, methodologies available for the analysis of multivariate data with multivariate methods are relatively limited. Here, we present Consensus Clustering (CClust) a new computational method based on clustering of time profiles and posterior identification of correlation between clusters and predictors. Subjects are first clustered in groups according to a response variable temporal profile, using a robust consensus-based strategy. To discover which of the remaining variables are associated with the resulting groups, a non-parametric hypothesis test is performed between groups at every time point, and then the results are aggregated according to the Fisher method. Our approach is tested through its application to the EarlyBird cohort database, which contains temporal variations of clinical, metabolic, and anthropometric profiles in a population of 150 children followed-up annually from age 5 to age 16. Our results show that our consensus-based method is able to overcome the problem of the approach-dependent results produced by current clustering algorithms, producing groups defined according to Insulin Resistance (IR) and biological age (Tanner Score). Moreover, it provides meaningful biological results confirmed by hypothesis testing with most of the main clinical variables. These results position CClust as a valid alternative for the analysis of multivariate longitudinal data. Nature Publishing Group UK 2018-01-23 /pmc/articles/PMC5780503/ /pubmed/29362412 http://dx.doi.org/10.1038/s41598-017-19059-2 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Lauria, Mario
Persico, Maria
Dordevic, Nikola
Cominetti, Ornella
Matone, Alice
Hosking, Joanne
Jeffery, Alison
Pinkney, Jonathan
Da Silva, Laeticia
Priami, Corrado
Montoliu, Ivan
Martin, François-Pierre
Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73)
title Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73)
title_full Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73)
title_fullStr Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73)
title_full_unstemmed Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73)
title_short Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73)
title_sort consensus clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (earlybird 73)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5780503/
https://www.ncbi.nlm.nih.gov/pubmed/29362412
http://dx.doi.org/10.1038/s41598-017-19059-2
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