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Seasonal Influenza Forecasting in Real Time Using the Incidence Decay With Exponential Adjustment Model
BACKGROUND: Seasonal influenza epidemics occur frequently. Rapid characterization of seasonal dynamics and forecasting of epidemic peaks and final sizes could help support real-time decision-making related to vaccination and other control measures. Real-time forecasting remains challenging. METHODS:...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5781299/ https://www.ncbi.nlm.nih.gov/pubmed/29497629 http://dx.doi.org/10.1093/ofid/ofx166 |
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author | Nasserie, Tahmina Tuite, Ashleigh R Whitmore, Lindsay Hatchette, Todd Drews, Steven J Peci, Adriana Kwong, Jeffrey C Friedman, Dara Garber, Gary Gubbay, Jonathan Fisman, David N |
author_facet | Nasserie, Tahmina Tuite, Ashleigh R Whitmore, Lindsay Hatchette, Todd Drews, Steven J Peci, Adriana Kwong, Jeffrey C Friedman, Dara Garber, Gary Gubbay, Jonathan Fisman, David N |
author_sort | Nasserie, Tahmina |
collection | PubMed |
description | BACKGROUND: Seasonal influenza epidemics occur frequently. Rapid characterization of seasonal dynamics and forecasting of epidemic peaks and final sizes could help support real-time decision-making related to vaccination and other control measures. Real-time forecasting remains challenging. METHODS: We used the previously described “incidence decay with exponential adjustment” (IDEA) model, a 2-parameter phenomenological model, to evaluate the characteristics of the 2015–2016 influenza season in 4 Canadian jurisdictions: the Provinces of Alberta, Nova Scotia and Ontario, and the City of Ottawa. Model fits were updated weekly with receipt of incident virologically confirmed case counts. Best-fit models were used to project seasonal influenza peaks and epidemic final sizes. RESULTS: The 2015–2016 influenza season was mild and late-peaking. Parameter estimates generated through fitting were consistent in the 2 largest jurisdictions (Ontario and Alberta) and with pooled data including Nova Scotia counts (R(0) approximately 1.4 for all fits). Lower R(0) estimates were generated in Nova Scotia and Ottawa. Final size projections that made use of complete time series were accurate to within 6% of true final sizes, but final size was using pre-peak data. Projections of epidemic peaks stabilized before the true epidemic peak, but these were persistently early (~2 weeks) relative to the true peak. CONCLUSIONS: A simple, 2-parameter influenza model provided reasonably accurate real-time projections of influenza seasonal dynamics in an atypically late, mild influenza season. Challenges are similar to those seen with more complex forecasting methodologies. Future work includes identification of seasonal characteristics associated with variability in model performance. |
format | Online Article Text |
id | pubmed-5781299 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-57812992018-03-01 Seasonal Influenza Forecasting in Real Time Using the Incidence Decay With Exponential Adjustment Model Nasserie, Tahmina Tuite, Ashleigh R Whitmore, Lindsay Hatchette, Todd Drews, Steven J Peci, Adriana Kwong, Jeffrey C Friedman, Dara Garber, Gary Gubbay, Jonathan Fisman, David N Open Forum Infect Dis Major Article BACKGROUND: Seasonal influenza epidemics occur frequently. Rapid characterization of seasonal dynamics and forecasting of epidemic peaks and final sizes could help support real-time decision-making related to vaccination and other control measures. Real-time forecasting remains challenging. METHODS: We used the previously described “incidence decay with exponential adjustment” (IDEA) model, a 2-parameter phenomenological model, to evaluate the characteristics of the 2015–2016 influenza season in 4 Canadian jurisdictions: the Provinces of Alberta, Nova Scotia and Ontario, and the City of Ottawa. Model fits were updated weekly with receipt of incident virologically confirmed case counts. Best-fit models were used to project seasonal influenza peaks and epidemic final sizes. RESULTS: The 2015–2016 influenza season was mild and late-peaking. Parameter estimates generated through fitting were consistent in the 2 largest jurisdictions (Ontario and Alberta) and with pooled data including Nova Scotia counts (R(0) approximately 1.4 for all fits). Lower R(0) estimates were generated in Nova Scotia and Ottawa. Final size projections that made use of complete time series were accurate to within 6% of true final sizes, but final size was using pre-peak data. Projections of epidemic peaks stabilized before the true epidemic peak, but these were persistently early (~2 weeks) relative to the true peak. CONCLUSIONS: A simple, 2-parameter influenza model provided reasonably accurate real-time projections of influenza seasonal dynamics in an atypically late, mild influenza season. Challenges are similar to those seen with more complex forecasting methodologies. Future work includes identification of seasonal characteristics associated with variability in model performance. Oxford University Press 2017-09-27 /pmc/articles/PMC5781299/ /pubmed/29497629 http://dx.doi.org/10.1093/ofid/ofx166 Text en © The Author 2017. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Major Article Nasserie, Tahmina Tuite, Ashleigh R Whitmore, Lindsay Hatchette, Todd Drews, Steven J Peci, Adriana Kwong, Jeffrey C Friedman, Dara Garber, Gary Gubbay, Jonathan Fisman, David N Seasonal Influenza Forecasting in Real Time Using the Incidence Decay With Exponential Adjustment Model |
title | Seasonal Influenza Forecasting in Real Time Using the Incidence Decay With Exponential Adjustment Model |
title_full | Seasonal Influenza Forecasting in Real Time Using the Incidence Decay With Exponential Adjustment Model |
title_fullStr | Seasonal Influenza Forecasting in Real Time Using the Incidence Decay With Exponential Adjustment Model |
title_full_unstemmed | Seasonal Influenza Forecasting in Real Time Using the Incidence Decay With Exponential Adjustment Model |
title_short | Seasonal Influenza Forecasting in Real Time Using the Incidence Decay With Exponential Adjustment Model |
title_sort | seasonal influenza forecasting in real time using the incidence decay with exponential adjustment model |
topic | Major Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5781299/ https://www.ncbi.nlm.nih.gov/pubmed/29497629 http://dx.doi.org/10.1093/ofid/ofx166 |
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