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Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors
The development of tracking methods for automatically quantifying individual behavior and social interactions in animal groups has open up new perspectives for building quantitative and predictive models of collective behavior. In this work, we combine extensive data analyses with a modeling approac...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5783427/ https://www.ncbi.nlm.nih.gov/pubmed/29324853 http://dx.doi.org/10.1371/journal.pcbi.1005933 |
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author | Calovi, Daniel S. Litchinko, Alexandra Lecheval, Valentin Lopez, Ugo Pérez Escudero, Alfonso Chaté, Hugues Sire, Clément Theraulaz, Guy |
author_facet | Calovi, Daniel S. Litchinko, Alexandra Lecheval, Valentin Lopez, Ugo Pérez Escudero, Alfonso Chaté, Hugues Sire, Clément Theraulaz, Guy |
author_sort | Calovi, Daniel S. |
collection | PubMed |
description | The development of tracking methods for automatically quantifying individual behavior and social interactions in animal groups has open up new perspectives for building quantitative and predictive models of collective behavior. In this work, we combine extensive data analyses with a modeling approach to measure, disentangle, and reconstruct the actual functional form of interactions involved in the coordination of swimming in Rummy-nose tetra (Hemigrammus rhodostomus). This species of fish performs burst-and-coast swimming behavior that consists of sudden heading changes combined with brief accelerations followed by quasi-passive, straight decelerations. We quantify the spontaneous stochastic behavior of a fish and the interactions that govern wall avoidance and the reaction to a neighboring fish, the latter by exploiting general symmetry constraints for the interactions. In contrast with previous experimental works, we find that both attraction and alignment behaviors control the reaction of fish to a neighbor. We then exploit these results to build a model of spontaneous burst-and-coast swimming and interactions of fish, with all parameters being estimated or directly measured from experiments. This model quantitatively reproduces the key features of the motion and spatial distributions observed in experiments with a single fish and with two fish. This demonstrates the power of our method that exploits large amounts of data for disentangling and fully characterizing the interactions that govern collective behaviors in animals groups. |
format | Online Article Text |
id | pubmed-5783427 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-57834272018-02-08 Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors Calovi, Daniel S. Litchinko, Alexandra Lecheval, Valentin Lopez, Ugo Pérez Escudero, Alfonso Chaté, Hugues Sire, Clément Theraulaz, Guy PLoS Comput Biol Research Article The development of tracking methods for automatically quantifying individual behavior and social interactions in animal groups has open up new perspectives for building quantitative and predictive models of collective behavior. In this work, we combine extensive data analyses with a modeling approach to measure, disentangle, and reconstruct the actual functional form of interactions involved in the coordination of swimming in Rummy-nose tetra (Hemigrammus rhodostomus). This species of fish performs burst-and-coast swimming behavior that consists of sudden heading changes combined with brief accelerations followed by quasi-passive, straight decelerations. We quantify the spontaneous stochastic behavior of a fish and the interactions that govern wall avoidance and the reaction to a neighboring fish, the latter by exploiting general symmetry constraints for the interactions. In contrast with previous experimental works, we find that both attraction and alignment behaviors control the reaction of fish to a neighbor. We then exploit these results to build a model of spontaneous burst-and-coast swimming and interactions of fish, with all parameters being estimated or directly measured from experiments. This model quantitatively reproduces the key features of the motion and spatial distributions observed in experiments with a single fish and with two fish. This demonstrates the power of our method that exploits large amounts of data for disentangling and fully characterizing the interactions that govern collective behaviors in animals groups. Public Library of Science 2018-01-11 /pmc/articles/PMC5783427/ /pubmed/29324853 http://dx.doi.org/10.1371/journal.pcbi.1005933 Text en © 2018 Calovi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Calovi, Daniel S. Litchinko, Alexandra Lecheval, Valentin Lopez, Ugo Pérez Escudero, Alfonso Chaté, Hugues Sire, Clément Theraulaz, Guy Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors |
title | Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors |
title_full | Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors |
title_fullStr | Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors |
title_full_unstemmed | Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors |
title_short | Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors |
title_sort | disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5783427/ https://www.ncbi.nlm.nih.gov/pubmed/29324853 http://dx.doi.org/10.1371/journal.pcbi.1005933 |
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