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Engineering β-sheets employing N-methylated heterochiral amino acids

There is a lack of functional group diversity in the reverse turn motifs nucleating a β-sheet conformation in designed peptides, proteins and foldamers. The majority of these sequences consist of d-Pro–l-Pro, d-Pro–Gly or Asn–Gly as the turn inducing motif restricting their biological application an...

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Autores principales: Ghosh, Dipan, Lahiri, Priyanka, Verma, Hitesh, Mukherjee, Somnath, Chatterjee, Jayanta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Royal Society of Chemistry 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5784515/
https://www.ncbi.nlm.nih.gov/pubmed/29449932
http://dx.doi.org/10.1039/c6sc00518g
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author Ghosh, Dipan
Lahiri, Priyanka
Verma, Hitesh
Mukherjee, Somnath
Chatterjee, Jayanta
author_facet Ghosh, Dipan
Lahiri, Priyanka
Verma, Hitesh
Mukherjee, Somnath
Chatterjee, Jayanta
author_sort Ghosh, Dipan
collection PubMed
description There is a lack of functional group diversity in the reverse turn motifs nucleating a β-sheet conformation in designed peptides, proteins and foldamers. The majority of these sequences consist of d-Pro–l-Pro, d-Pro–Gly or Asn–Gly as the turn inducing motif restricting their biological application and physicochemical modulation. In this report, for the first time we elucidate that N-methylation of heterochiral amino acids in linear peptides nucleates β-sheet conformation without the necessity of having a ring or covalent constraint at the reverse turn. Our results show that d-Pro can be conveniently substituted by any other N-methylated d-amino acid followed by an N-methylated l-amino acid or sarcosine to adopt a βII′ turn inducing the β-sheet folding. Furthermore, we reveal that a single amino acid either at the i + 1 or i + 2 site of the reverse turn can modulate the right-handed twist, which eventually dictates the extent of the foldedness of the β-hairpin.
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spelling pubmed-57845152018-02-15 Engineering β-sheets employing N-methylated heterochiral amino acids Ghosh, Dipan Lahiri, Priyanka Verma, Hitesh Mukherjee, Somnath Chatterjee, Jayanta Chem Sci Chemistry There is a lack of functional group diversity in the reverse turn motifs nucleating a β-sheet conformation in designed peptides, proteins and foldamers. The majority of these sequences consist of d-Pro–l-Pro, d-Pro–Gly or Asn–Gly as the turn inducing motif restricting their biological application and physicochemical modulation. In this report, for the first time we elucidate that N-methylation of heterochiral amino acids in linear peptides nucleates β-sheet conformation without the necessity of having a ring or covalent constraint at the reverse turn. Our results show that d-Pro can be conveniently substituted by any other N-methylated d-amino acid followed by an N-methylated l-amino acid or sarcosine to adopt a βII′ turn inducing the β-sheet folding. Furthermore, we reveal that a single amino acid either at the i + 1 or i + 2 site of the reverse turn can modulate the right-handed twist, which eventually dictates the extent of the foldedness of the β-hairpin. Royal Society of Chemistry 2016-08-01 2016-04-21 /pmc/articles/PMC5784515/ /pubmed/29449932 http://dx.doi.org/10.1039/c6sc00518g Text en This journal is © The Royal Society of Chemistry 2016 http://creativecommons.org/licenses/by/3.0/ This article is freely available. This article is licensed under a Creative Commons Attribution 3.0 Unported Licence (CC BY 3.0)
spellingShingle Chemistry
Ghosh, Dipan
Lahiri, Priyanka
Verma, Hitesh
Mukherjee, Somnath
Chatterjee, Jayanta
Engineering β-sheets employing N-methylated heterochiral amino acids
title Engineering β-sheets employing N-methylated heterochiral amino acids
title_full Engineering β-sheets employing N-methylated heterochiral amino acids
title_fullStr Engineering β-sheets employing N-methylated heterochiral amino acids
title_full_unstemmed Engineering β-sheets employing N-methylated heterochiral amino acids
title_short Engineering β-sheets employing N-methylated heterochiral amino acids
title_sort engineering β-sheets employing n-methylated heterochiral amino acids
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5784515/
https://www.ncbi.nlm.nih.gov/pubmed/29449932
http://dx.doi.org/10.1039/c6sc00518g
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