Cargando…
Engineering β-sheets employing N-methylated heterochiral amino acids
There is a lack of functional group diversity in the reverse turn motifs nucleating a β-sheet conformation in designed peptides, proteins and foldamers. The majority of these sequences consist of d-Pro–l-Pro, d-Pro–Gly or Asn–Gly as the turn inducing motif restricting their biological application an...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Royal Society of Chemistry
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5784515/ https://www.ncbi.nlm.nih.gov/pubmed/29449932 http://dx.doi.org/10.1039/c6sc00518g |
_version_ | 1783295456691879936 |
---|---|
author | Ghosh, Dipan Lahiri, Priyanka Verma, Hitesh Mukherjee, Somnath Chatterjee, Jayanta |
author_facet | Ghosh, Dipan Lahiri, Priyanka Verma, Hitesh Mukherjee, Somnath Chatterjee, Jayanta |
author_sort | Ghosh, Dipan |
collection | PubMed |
description | There is a lack of functional group diversity in the reverse turn motifs nucleating a β-sheet conformation in designed peptides, proteins and foldamers. The majority of these sequences consist of d-Pro–l-Pro, d-Pro–Gly or Asn–Gly as the turn inducing motif restricting their biological application and physicochemical modulation. In this report, for the first time we elucidate that N-methylation of heterochiral amino acids in linear peptides nucleates β-sheet conformation without the necessity of having a ring or covalent constraint at the reverse turn. Our results show that d-Pro can be conveniently substituted by any other N-methylated d-amino acid followed by an N-methylated l-amino acid or sarcosine to adopt a βII′ turn inducing the β-sheet folding. Furthermore, we reveal that a single amino acid either at the i + 1 or i + 2 site of the reverse turn can modulate the right-handed twist, which eventually dictates the extent of the foldedness of the β-hairpin. |
format | Online Article Text |
id | pubmed-5784515 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-57845152018-02-15 Engineering β-sheets employing N-methylated heterochiral amino acids Ghosh, Dipan Lahiri, Priyanka Verma, Hitesh Mukherjee, Somnath Chatterjee, Jayanta Chem Sci Chemistry There is a lack of functional group diversity in the reverse turn motifs nucleating a β-sheet conformation in designed peptides, proteins and foldamers. The majority of these sequences consist of d-Pro–l-Pro, d-Pro–Gly or Asn–Gly as the turn inducing motif restricting their biological application and physicochemical modulation. In this report, for the first time we elucidate that N-methylation of heterochiral amino acids in linear peptides nucleates β-sheet conformation without the necessity of having a ring or covalent constraint at the reverse turn. Our results show that d-Pro can be conveniently substituted by any other N-methylated d-amino acid followed by an N-methylated l-amino acid or sarcosine to adopt a βII′ turn inducing the β-sheet folding. Furthermore, we reveal that a single amino acid either at the i + 1 or i + 2 site of the reverse turn can modulate the right-handed twist, which eventually dictates the extent of the foldedness of the β-hairpin. Royal Society of Chemistry 2016-08-01 2016-04-21 /pmc/articles/PMC5784515/ /pubmed/29449932 http://dx.doi.org/10.1039/c6sc00518g Text en This journal is © The Royal Society of Chemistry 2016 http://creativecommons.org/licenses/by/3.0/ This article is freely available. This article is licensed under a Creative Commons Attribution 3.0 Unported Licence (CC BY 3.0) |
spellingShingle | Chemistry Ghosh, Dipan Lahiri, Priyanka Verma, Hitesh Mukherjee, Somnath Chatterjee, Jayanta Engineering β-sheets employing N-methylated heterochiral amino acids |
title | Engineering β-sheets employing N-methylated heterochiral amino acids
|
title_full | Engineering β-sheets employing N-methylated heterochiral amino acids
|
title_fullStr | Engineering β-sheets employing N-methylated heterochiral amino acids
|
title_full_unstemmed | Engineering β-sheets employing N-methylated heterochiral amino acids
|
title_short | Engineering β-sheets employing N-methylated heterochiral amino acids
|
title_sort | engineering β-sheets employing n-methylated heterochiral amino acids |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5784515/ https://www.ncbi.nlm.nih.gov/pubmed/29449932 http://dx.doi.org/10.1039/c6sc00518g |
work_keys_str_mv | AT ghoshdipan engineeringbsheetsemployingnmethylatedheterochiralaminoacids AT lahiripriyanka engineeringbsheetsemployingnmethylatedheterochiralaminoacids AT vermahitesh engineeringbsheetsemployingnmethylatedheterochiralaminoacids AT mukherjeesomnath engineeringbsheetsemployingnmethylatedheterochiralaminoacids AT chatterjeejayanta engineeringbsheetsemployingnmethylatedheterochiralaminoacids |