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Improving generation length estimates for the IUCN Red List

The International Union for the Conservation of Nature (IUCN) Red List classifies species according to their risk of extinction, informing local to global conservation decisions. Here we look to advance the estimation of generation length, which is used as a time-scalar in the Red List as a way of a...

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Autores principales: Cooke, Robert S. C., Gilbert, Tania C., Riordan, Philip, Mallon, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5784970/
https://www.ncbi.nlm.nih.gov/pubmed/29370251
http://dx.doi.org/10.1371/journal.pone.0191770
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author Cooke, Robert S. C.
Gilbert, Tania C.
Riordan, Philip
Mallon, David
author_facet Cooke, Robert S. C.
Gilbert, Tania C.
Riordan, Philip
Mallon, David
author_sort Cooke, Robert S. C.
collection PubMed
description The International Union for the Conservation of Nature (IUCN) Red List classifies species according to their risk of extinction, informing local to global conservation decisions. Here we look to advance the estimation of generation length, which is used as a time-scalar in the Red List as a way of accounting for differences in species’ life-histories. We calculated or predicted generation length for 86 species of antelope following the Rspan approach. We also tested the importance of both allometry (body-mass) and phylogeny (phylogenetic eigenvectors) as predictors of generation length within a Phylogenetic Eigenvector Map (PEM) framework. We then evaluated the predictive power of this PEM and two binning approaches, following a leave-one-out cross-validation routine. We showed that captive and wild longevity data are nonequivalent and that both body-mass and phylogeny are important predictors for generation length (body-mass explained 64% and phylogeny 36% of the partitioned explained variance). Plus, both the PEM, and the binning approach that included both taxonomic rank and body-mass, had good predictive power and therefore are suitable for extrapolating generation length to missing-data species. Therefore, based on our findings, we advise separating captive and wild data when estimating generation length, and considering the implications of wild and captive data more widely in life-history analyses. We also recommend that body-mass and phylogeny should be used in combination, preferably under a PEM framework (as it was less reliant on available reference species and more explicitly accounts for phylogenetic relatedness) or a binning approach if a PEM is not feasible, to extrapolate generation length to missing-data species. Overall, we provide a transparent, consistent and transferable workflow for improving the use of the Rspan method to calculate generation length for the IUCN Red List.
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spelling pubmed-57849702018-02-09 Improving generation length estimates for the IUCN Red List Cooke, Robert S. C. Gilbert, Tania C. Riordan, Philip Mallon, David PLoS One Research Article The International Union for the Conservation of Nature (IUCN) Red List classifies species according to their risk of extinction, informing local to global conservation decisions. Here we look to advance the estimation of generation length, which is used as a time-scalar in the Red List as a way of accounting for differences in species’ life-histories. We calculated or predicted generation length for 86 species of antelope following the Rspan approach. We also tested the importance of both allometry (body-mass) and phylogeny (phylogenetic eigenvectors) as predictors of generation length within a Phylogenetic Eigenvector Map (PEM) framework. We then evaluated the predictive power of this PEM and two binning approaches, following a leave-one-out cross-validation routine. We showed that captive and wild longevity data are nonequivalent and that both body-mass and phylogeny are important predictors for generation length (body-mass explained 64% and phylogeny 36% of the partitioned explained variance). Plus, both the PEM, and the binning approach that included both taxonomic rank and body-mass, had good predictive power and therefore are suitable for extrapolating generation length to missing-data species. Therefore, based on our findings, we advise separating captive and wild data when estimating generation length, and considering the implications of wild and captive data more widely in life-history analyses. We also recommend that body-mass and phylogeny should be used in combination, preferably under a PEM framework (as it was less reliant on available reference species and more explicitly accounts for phylogenetic relatedness) or a binning approach if a PEM is not feasible, to extrapolate generation length to missing-data species. Overall, we provide a transparent, consistent and transferable workflow for improving the use of the Rspan method to calculate generation length for the IUCN Red List. Public Library of Science 2018-01-25 /pmc/articles/PMC5784970/ /pubmed/29370251 http://dx.doi.org/10.1371/journal.pone.0191770 Text en © 2018 Cooke et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Cooke, Robert S. C.
Gilbert, Tania C.
Riordan, Philip
Mallon, David
Improving generation length estimates for the IUCN Red List
title Improving generation length estimates for the IUCN Red List
title_full Improving generation length estimates for the IUCN Red List
title_fullStr Improving generation length estimates for the IUCN Red List
title_full_unstemmed Improving generation length estimates for the IUCN Red List
title_short Improving generation length estimates for the IUCN Red List
title_sort improving generation length estimates for the iucn red list
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5784970/
https://www.ncbi.nlm.nih.gov/pubmed/29370251
http://dx.doi.org/10.1371/journal.pone.0191770
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