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Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge

The type strain SUR2 of the novel species Chryseobacterium limigenitum was isolated from a dehydrated sludge of the municipal sewage treatment plant in Dogoše near Maribor in Slovenia. The draft genome, with 60 contigs, 4,697,725 bp, 34.4% of G+C content, was obtained using the Illumina HiSeq 2500-1...

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Autores principales: Škraban, Jure, Kyrpides, Nikos C., Shapiro, Nicole, Whitman, William B., Trček, Janja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5790571/
https://www.ncbi.nlm.nih.gov/pubmed/28774639
http://dx.doi.org/10.1016/j.bjm.2017.03.009
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author Škraban, Jure
Kyrpides, Nikos C.
Shapiro, Nicole
Whitman, William B.
Trček, Janja
author_facet Škraban, Jure
Kyrpides, Nikos C.
Shapiro, Nicole
Whitman, William B.
Trček, Janja
author_sort Škraban, Jure
collection PubMed
description The type strain SUR2 of the novel species Chryseobacterium limigenitum was isolated from a dehydrated sludge of the municipal sewage treatment plant in Dogoše near Maribor in Slovenia. The draft genome, with 60 contigs, 4,697,725 bp, 34.4% of G+C content, was obtained using the Illumina HiSeq 2500-1 platform. Joint Genome Institute Microbial Genome Annotation Pipeline (MGAP v.4) has identified 4322 protein-coding sequences including resistance genes against arsenic and other heavy metals. In addition, a subclass B3 metallo-β-lactamase, which confers resistance to penicillins, cephalosporins and carbapenems, was also present in the genome. The genome sequence provides important information regarding bioremediation potential and pathogenic properties of this newly identified species.
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spelling pubmed-57905712018-01-31 Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge Škraban, Jure Kyrpides, Nikos C. Shapiro, Nicole Whitman, William B. Trček, Janja Braz J Microbiol Genome Announcement The type strain SUR2 of the novel species Chryseobacterium limigenitum was isolated from a dehydrated sludge of the municipal sewage treatment plant in Dogoše near Maribor in Slovenia. The draft genome, with 60 contigs, 4,697,725 bp, 34.4% of G+C content, was obtained using the Illumina HiSeq 2500-1 platform. Joint Genome Institute Microbial Genome Annotation Pipeline (MGAP v.4) has identified 4322 protein-coding sequences including resistance genes against arsenic and other heavy metals. In addition, a subclass B3 metallo-β-lactamase, which confers resistance to penicillins, cephalosporins and carbapenems, was also present in the genome. The genome sequence provides important information regarding bioremediation potential and pathogenic properties of this newly identified species. Elsevier 2017-07-18 /pmc/articles/PMC5790571/ /pubmed/28774639 http://dx.doi.org/10.1016/j.bjm.2017.03.009 Text en © 2017 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Genome Announcement
Škraban, Jure
Kyrpides, Nikos C.
Shapiro, Nicole
Whitman, William B.
Trček, Janja
Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge
title Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge
title_full Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge
title_fullStr Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge
title_full_unstemmed Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge
title_short Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge
title_sort draft genome sequence of chryseobacterium limigenitum sur2(t) (lmg 28734(t)) isolated from dehydrated sludge
topic Genome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5790571/
https://www.ncbi.nlm.nih.gov/pubmed/28774639
http://dx.doi.org/10.1016/j.bjm.2017.03.009
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