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Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge
The type strain SUR2 of the novel species Chryseobacterium limigenitum was isolated from a dehydrated sludge of the municipal sewage treatment plant in Dogoše near Maribor in Slovenia. The draft genome, with 60 contigs, 4,697,725 bp, 34.4% of G+C content, was obtained using the Illumina HiSeq 2500-1...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5790571/ https://www.ncbi.nlm.nih.gov/pubmed/28774639 http://dx.doi.org/10.1016/j.bjm.2017.03.009 |
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author | Škraban, Jure Kyrpides, Nikos C. Shapiro, Nicole Whitman, William B. Trček, Janja |
author_facet | Škraban, Jure Kyrpides, Nikos C. Shapiro, Nicole Whitman, William B. Trček, Janja |
author_sort | Škraban, Jure |
collection | PubMed |
description | The type strain SUR2 of the novel species Chryseobacterium limigenitum was isolated from a dehydrated sludge of the municipal sewage treatment plant in Dogoše near Maribor in Slovenia. The draft genome, with 60 contigs, 4,697,725 bp, 34.4% of G+C content, was obtained using the Illumina HiSeq 2500-1 platform. Joint Genome Institute Microbial Genome Annotation Pipeline (MGAP v.4) has identified 4322 protein-coding sequences including resistance genes against arsenic and other heavy metals. In addition, a subclass B3 metallo-β-lactamase, which confers resistance to penicillins, cephalosporins and carbapenems, was also present in the genome. The genome sequence provides important information regarding bioremediation potential and pathogenic properties of this newly identified species. |
format | Online Article Text |
id | pubmed-5790571 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-57905712018-01-31 Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge Škraban, Jure Kyrpides, Nikos C. Shapiro, Nicole Whitman, William B. Trček, Janja Braz J Microbiol Genome Announcement The type strain SUR2 of the novel species Chryseobacterium limigenitum was isolated from a dehydrated sludge of the municipal sewage treatment plant in Dogoše near Maribor in Slovenia. The draft genome, with 60 contigs, 4,697,725 bp, 34.4% of G+C content, was obtained using the Illumina HiSeq 2500-1 platform. Joint Genome Institute Microbial Genome Annotation Pipeline (MGAP v.4) has identified 4322 protein-coding sequences including resistance genes against arsenic and other heavy metals. In addition, a subclass B3 metallo-β-lactamase, which confers resistance to penicillins, cephalosporins and carbapenems, was also present in the genome. The genome sequence provides important information regarding bioremediation potential and pathogenic properties of this newly identified species. Elsevier 2017-07-18 /pmc/articles/PMC5790571/ /pubmed/28774639 http://dx.doi.org/10.1016/j.bjm.2017.03.009 Text en © 2017 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Genome Announcement Škraban, Jure Kyrpides, Nikos C. Shapiro, Nicole Whitman, William B. Trček, Janja Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge |
title | Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge |
title_full | Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge |
title_fullStr | Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge |
title_full_unstemmed | Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge |
title_short | Draft genome sequence of Chryseobacterium limigenitum SUR2(T) (LMG 28734(T)) isolated from dehydrated sludge |
title_sort | draft genome sequence of chryseobacterium limigenitum sur2(t) (lmg 28734(t)) isolated from dehydrated sludge |
topic | Genome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5790571/ https://www.ncbi.nlm.nih.gov/pubmed/28774639 http://dx.doi.org/10.1016/j.bjm.2017.03.009 |
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