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The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat

Extremely low temperatures present various challenges to life that include ice formation and effects on metabolic capacity. Psyhcrophilic microorganisms typically have an array of mechanisms to enable survival in cold temperatures. In this study, we sequenced and analysed the genome of a psychrophil...

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Autores principales: Firdaus-Raih, Mohd, Hashim, Noor Haza Fazlin, Bharudin, Izwan, Abu Bakar, Mohd Faizal, Huang, Kie Kyon, Alias, Halimah, Lee, Bernard K. B., Mat Isa, Mohd Noor, Mat-Sharani, Shuhaila, Sulaiman, Suhaila, Tay, Lih Jinq, Zolkefli, Radziah, Muhammad Noor, Yusuf, Law, Douglas Sie Nguong, Abdul Rahman, Siti Hamidah, Md-Illias, Rosli, Abu Bakar, Farah Diba, Najimudin, Nazalan, Abdul Murad, Abdul Munir, Mahadi, Nor Muhammad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5791967/
https://www.ncbi.nlm.nih.gov/pubmed/29385175
http://dx.doi.org/10.1371/journal.pone.0189947
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author Firdaus-Raih, Mohd
Hashim, Noor Haza Fazlin
Bharudin, Izwan
Abu Bakar, Mohd Faizal
Huang, Kie Kyon
Alias, Halimah
Lee, Bernard K. B.
Mat Isa, Mohd Noor
Mat-Sharani, Shuhaila
Sulaiman, Suhaila
Tay, Lih Jinq
Zolkefli, Radziah
Muhammad Noor, Yusuf
Law, Douglas Sie Nguong
Abdul Rahman, Siti Hamidah
Md-Illias, Rosli
Abu Bakar, Farah Diba
Najimudin, Nazalan
Abdul Murad, Abdul Munir
Mahadi, Nor Muhammad
author_facet Firdaus-Raih, Mohd
Hashim, Noor Haza Fazlin
Bharudin, Izwan
Abu Bakar, Mohd Faizal
Huang, Kie Kyon
Alias, Halimah
Lee, Bernard K. B.
Mat Isa, Mohd Noor
Mat-Sharani, Shuhaila
Sulaiman, Suhaila
Tay, Lih Jinq
Zolkefli, Radziah
Muhammad Noor, Yusuf
Law, Douglas Sie Nguong
Abdul Rahman, Siti Hamidah
Md-Illias, Rosli
Abu Bakar, Farah Diba
Najimudin, Nazalan
Abdul Murad, Abdul Munir
Mahadi, Nor Muhammad
author_sort Firdaus-Raih, Mohd
collection PubMed
description Extremely low temperatures present various challenges to life that include ice formation and effects on metabolic capacity. Psyhcrophilic microorganisms typically have an array of mechanisms to enable survival in cold temperatures. In this study, we sequenced and analysed the genome of a psychrophilic yeast isolated in the Antarctic region, Glaciozyma antarctica. The genome annotation identified 7857 protein coding sequences. From the genome sequence analysis we were able to identify genes that encoded for proteins known to be associated with cold survival, in addition to annotating genes that are unique to G. antarctica. For genes that are known to be involved in cold adaptation such as anti-freeze proteins (AFPs), our gene expression analysis revealed that they were differentially transcribed over time and in response to different temperatures. This indicated the presence of an array of adaptation systems that can respond to a changing but persistent cold environment. We were also able to validate the activity of all the AFPs annotated where the recombinant AFPs demonstrated anti-freeze capacity. This work is an important foundation for further collective exploration into psychrophilic microbiology where among other potential, the genes unique to this species may represent a pool of novel mechanisms for cold survival.
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spelling pubmed-57919672018-02-09 The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat Firdaus-Raih, Mohd Hashim, Noor Haza Fazlin Bharudin, Izwan Abu Bakar, Mohd Faizal Huang, Kie Kyon Alias, Halimah Lee, Bernard K. B. Mat Isa, Mohd Noor Mat-Sharani, Shuhaila Sulaiman, Suhaila Tay, Lih Jinq Zolkefli, Radziah Muhammad Noor, Yusuf Law, Douglas Sie Nguong Abdul Rahman, Siti Hamidah Md-Illias, Rosli Abu Bakar, Farah Diba Najimudin, Nazalan Abdul Murad, Abdul Munir Mahadi, Nor Muhammad PLoS One Research Article Extremely low temperatures present various challenges to life that include ice formation and effects on metabolic capacity. Psyhcrophilic microorganisms typically have an array of mechanisms to enable survival in cold temperatures. In this study, we sequenced and analysed the genome of a psychrophilic yeast isolated in the Antarctic region, Glaciozyma antarctica. The genome annotation identified 7857 protein coding sequences. From the genome sequence analysis we were able to identify genes that encoded for proteins known to be associated with cold survival, in addition to annotating genes that are unique to G. antarctica. For genes that are known to be involved in cold adaptation such as anti-freeze proteins (AFPs), our gene expression analysis revealed that they were differentially transcribed over time and in response to different temperatures. This indicated the presence of an array of adaptation systems that can respond to a changing but persistent cold environment. We were also able to validate the activity of all the AFPs annotated where the recombinant AFPs demonstrated anti-freeze capacity. This work is an important foundation for further collective exploration into psychrophilic microbiology where among other potential, the genes unique to this species may represent a pool of novel mechanisms for cold survival. Public Library of Science 2018-01-31 /pmc/articles/PMC5791967/ /pubmed/29385175 http://dx.doi.org/10.1371/journal.pone.0189947 Text en © 2018 Firdaus-Raih et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Firdaus-Raih, Mohd
Hashim, Noor Haza Fazlin
Bharudin, Izwan
Abu Bakar, Mohd Faizal
Huang, Kie Kyon
Alias, Halimah
Lee, Bernard K. B.
Mat Isa, Mohd Noor
Mat-Sharani, Shuhaila
Sulaiman, Suhaila
Tay, Lih Jinq
Zolkefli, Radziah
Muhammad Noor, Yusuf
Law, Douglas Sie Nguong
Abdul Rahman, Siti Hamidah
Md-Illias, Rosli
Abu Bakar, Farah Diba
Najimudin, Nazalan
Abdul Murad, Abdul Munir
Mahadi, Nor Muhammad
The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat
title The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat
title_full The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat
title_fullStr The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat
title_full_unstemmed The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat
title_short The Glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat
title_sort glaciozyma antarctica genome reveals an array of systems that provide sustained responses towards temperature variations in a persistently cold habitat
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5791967/
https://www.ncbi.nlm.nih.gov/pubmed/29385175
http://dx.doi.org/10.1371/journal.pone.0189947
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