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Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer
Metastasis of head and neck tumors is responsible for a high mortality rate. Understanding its biochemistry may allow insights into tumorigenesis. To that end we carried out RNA-Seq analyses of 5 SCC9 derived oral cancer cell lines displaying increased invasive potential. Differentially expressed ge...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5792437/ https://www.ncbi.nlm.nih.gov/pubmed/29386520 http://dx.doi.org/10.1038/s41598-017-19010-5 |
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author | Pérez-Valencia, Juan Alberto Prosdocimi, Francisco Cesari, Italo M. da Costa, Igor Rodrigues Furtado, Carolina Agostini, Michelle Rumjanek, Franklin David |
author_facet | Pérez-Valencia, Juan Alberto Prosdocimi, Francisco Cesari, Italo M. da Costa, Igor Rodrigues Furtado, Carolina Agostini, Michelle Rumjanek, Franklin David |
author_sort | Pérez-Valencia, Juan Alberto |
collection | PubMed |
description | Metastasis of head and neck tumors is responsible for a high mortality rate. Understanding its biochemistry may allow insights into tumorigenesis. To that end we carried out RNA-Seq analyses of 5 SCC9 derived oral cancer cell lines displaying increased invasive potential. Differentially expressed genes (DEGs) were annotated based on p-values and false discovery rate (q-values). All 292 KEGG pathways related to the human genome were compared in order to pinpoint the absolute and relative contributions to the invasive process considering the 8 hallmarks of cancer plus 2 new defined categories, as well as we made with our transcriptomic data. In terms of absolute contribution, the highest correlations were associated to the categories of evading immune destruction and energy metabolism and for relative contributions, angiogenesis and evading immune destruction. DEGs were distributed into each one of all possible modes of regulation, regarding up, down and continuum expression, along the 3 stages of metastatic progression. For p-values twenty-six genes were consistently present along the tumoral progression and 4 for q-values. Among the DEGs, we found 2 novel potentially informative metastatic markers: PIGG and SLC8B1. Furthermore, interactome analysis showed that MYH14, ANGPTL4, PPARD and ENPP1 are amenable to pharmacological interventions. |
format | Online Article Text |
id | pubmed-5792437 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57924372018-02-12 Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer Pérez-Valencia, Juan Alberto Prosdocimi, Francisco Cesari, Italo M. da Costa, Igor Rodrigues Furtado, Carolina Agostini, Michelle Rumjanek, Franklin David Sci Rep Article Metastasis of head and neck tumors is responsible for a high mortality rate. Understanding its biochemistry may allow insights into tumorigenesis. To that end we carried out RNA-Seq analyses of 5 SCC9 derived oral cancer cell lines displaying increased invasive potential. Differentially expressed genes (DEGs) were annotated based on p-values and false discovery rate (q-values). All 292 KEGG pathways related to the human genome were compared in order to pinpoint the absolute and relative contributions to the invasive process considering the 8 hallmarks of cancer plus 2 new defined categories, as well as we made with our transcriptomic data. In terms of absolute contribution, the highest correlations were associated to the categories of evading immune destruction and energy metabolism and for relative contributions, angiogenesis and evading immune destruction. DEGs were distributed into each one of all possible modes of regulation, regarding up, down and continuum expression, along the 3 stages of metastatic progression. For p-values twenty-six genes were consistently present along the tumoral progression and 4 for q-values. Among the DEGs, we found 2 novel potentially informative metastatic markers: PIGG and SLC8B1. Furthermore, interactome analysis showed that MYH14, ANGPTL4, PPARD and ENPP1 are amenable to pharmacological interventions. Nature Publishing Group UK 2018-01-31 /pmc/articles/PMC5792437/ /pubmed/29386520 http://dx.doi.org/10.1038/s41598-017-19010-5 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Pérez-Valencia, Juan Alberto Prosdocimi, Francisco Cesari, Italo M. da Costa, Igor Rodrigues Furtado, Carolina Agostini, Michelle Rumjanek, Franklin David Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer |
title | Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer |
title_full | Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer |
title_fullStr | Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer |
title_full_unstemmed | Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer |
title_short | Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer |
title_sort | angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5792437/ https://www.ncbi.nlm.nih.gov/pubmed/29386520 http://dx.doi.org/10.1038/s41598-017-19010-5 |
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