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A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

The Colorado potato beetle is one of the most challenging agricultural pests to manage. It has shown a spectacular ability to adapt to a variety of solanaceaeous plants and variable climates during its global invasion, and, notably, to rapidly evolve insecticide resistance. To examine evidence of ra...

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Autores principales: Schoville, Sean D., Chen, Yolanda H., Andersson, Martin N., Benoit, Joshua B., Bhandari, Anita, Bowsher, Julia H., Brevik, Kristian, Cappelle, Kaat, Chen, Mei-Ju M., Childers, Anna K., Childers, Christopher, Christiaens, Olivier, Clements, Justin, Didion, Elise M., Elpidina, Elena N., Engsontia, Patamarerk, Friedrich, Markus, García-Robles, Inmaculada, Gibbs, Richard A., Goswami, Chandan, Grapputo, Alessandro, Gruden, Kristina, Grynberg, Marcin, Henrissat, Bernard, Jennings, Emily C., Jones, Jeffery W., Kalsi, Megha, Khan, Sher A., Kumar, Abhishek, Li, Fei, Lombard, Vincent, Ma, Xingzhou, Martynov, Alexander, Miller, Nicholas J., Mitchell, Robert F., Munoz-Torres, Monica, Muszewska, Anna, Oppert, Brenda, Palli, Subba Reddy, Panfilio, Kristen A., Pauchet, Yannick, Perkin, Lindsey C., Petek, Marko, Poelchau, Monica F., Record, Éric, Rinehart, Joseph P., Robertson, Hugh M., Rosendale, Andrew J., Ruiz-Arroyo, Victor M., Smagghe, Guy, Szendrei, Zsofia, Thomas, Gregg W.C., Torson, Alex S., Vargas Jentzsch, Iris M., Weirauch, Matthew T., Yates, Ashley D., Yocum, George D., Yoon, June-Sun, Richards, Stephen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5792627/
https://www.ncbi.nlm.nih.gov/pubmed/29386578
http://dx.doi.org/10.1038/s41598-018-20154-1
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author Schoville, Sean D.
Chen, Yolanda H.
Andersson, Martin N.
Benoit, Joshua B.
Bhandari, Anita
Bowsher, Julia H.
Brevik, Kristian
Cappelle, Kaat
Chen, Mei-Ju M.
Childers, Anna K.
Childers, Christopher
Christiaens, Olivier
Clements, Justin
Didion, Elise M.
Elpidina, Elena N.
Engsontia, Patamarerk
Friedrich, Markus
García-Robles, Inmaculada
Gibbs, Richard A.
Goswami, Chandan
Grapputo, Alessandro
Gruden, Kristina
Grynberg, Marcin
Henrissat, Bernard
Jennings, Emily C.
Jones, Jeffery W.
Kalsi, Megha
Khan, Sher A.
Kumar, Abhishek
Li, Fei
Lombard, Vincent
Ma, Xingzhou
Martynov, Alexander
Miller, Nicholas J.
Mitchell, Robert F.
Munoz-Torres, Monica
Muszewska, Anna
Oppert, Brenda
Palli, Subba Reddy
Panfilio, Kristen A.
Pauchet, Yannick
Perkin, Lindsey C.
Petek, Marko
Poelchau, Monica F.
Record, Éric
Rinehart, Joseph P.
Robertson, Hugh M.
Rosendale, Andrew J.
Ruiz-Arroyo, Victor M.
Smagghe, Guy
Szendrei, Zsofia
Thomas, Gregg W.C.
Torson, Alex S.
Vargas Jentzsch, Iris M.
Weirauch, Matthew T.
Yates, Ashley D.
Yocum, George D.
Yoon, June-Sun
Richards, Stephen
author_facet Schoville, Sean D.
Chen, Yolanda H.
Andersson, Martin N.
Benoit, Joshua B.
Bhandari, Anita
Bowsher, Julia H.
Brevik, Kristian
Cappelle, Kaat
Chen, Mei-Ju M.
Childers, Anna K.
Childers, Christopher
Christiaens, Olivier
Clements, Justin
Didion, Elise M.
Elpidina, Elena N.
Engsontia, Patamarerk
Friedrich, Markus
García-Robles, Inmaculada
Gibbs, Richard A.
Goswami, Chandan
Grapputo, Alessandro
Gruden, Kristina
Grynberg, Marcin
Henrissat, Bernard
Jennings, Emily C.
Jones, Jeffery W.
Kalsi, Megha
Khan, Sher A.
Kumar, Abhishek
Li, Fei
Lombard, Vincent
Ma, Xingzhou
Martynov, Alexander
Miller, Nicholas J.
Mitchell, Robert F.
Munoz-Torres, Monica
Muszewska, Anna
Oppert, Brenda
Palli, Subba Reddy
Panfilio, Kristen A.
Pauchet, Yannick
Perkin, Lindsey C.
Petek, Marko
Poelchau, Monica F.
Record, Éric
Rinehart, Joseph P.
Robertson, Hugh M.
Rosendale, Andrew J.
Ruiz-Arroyo, Victor M.
Smagghe, Guy
Szendrei, Zsofia
Thomas, Gregg W.C.
Torson, Alex S.
Vargas Jentzsch, Iris M.
Weirauch, Matthew T.
Yates, Ashley D.
Yocum, George D.
Yoon, June-Sun
Richards, Stephen
author_sort Schoville, Sean D.
collection PubMed
description The Colorado potato beetle is one of the most challenging agricultural pests to manage. It has shown a spectacular ability to adapt to a variety of solanaceaeous plants and variable climates during its global invasion, and, notably, to rapidly evolve insecticide resistance. To examine evidence of rapid evolutionary change, and to understand the genetic basis of herbivory and insecticide resistance, we tested for structural and functional genomic changes relative to other arthropod species using genome sequencing, transcriptomics, and community annotation. Two factors that might facilitate rapid evolutionary change include transposable elements, which comprise at least 17% of the genome and are rapidly evolving compared to other Coleoptera, and high levels of nucleotide diversity in rapidly growing pest populations. Adaptations to plant feeding are evident in gene expansions and differential expression of digestive enzymes in gut tissues, as well as expansions of gustatory receptors for bitter tasting. Surprisingly, the suite of genes involved in insecticide resistance is similar to other beetles. Finally, duplications in the RNAi pathway might explain why Leptinotarsa decemlineata has high sensitivity to dsRNA. The L. decemlineata genome provides opportunities to investigate a broad range of phenotypes and to develop sustainable methods to control this widely successful pest.
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spelling pubmed-57926272018-02-12 A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae) Schoville, Sean D. Chen, Yolanda H. Andersson, Martin N. Benoit, Joshua B. Bhandari, Anita Bowsher, Julia H. Brevik, Kristian Cappelle, Kaat Chen, Mei-Ju M. Childers, Anna K. Childers, Christopher Christiaens, Olivier Clements, Justin Didion, Elise M. Elpidina, Elena N. Engsontia, Patamarerk Friedrich, Markus García-Robles, Inmaculada Gibbs, Richard A. Goswami, Chandan Grapputo, Alessandro Gruden, Kristina Grynberg, Marcin Henrissat, Bernard Jennings, Emily C. Jones, Jeffery W. Kalsi, Megha Khan, Sher A. Kumar, Abhishek Li, Fei Lombard, Vincent Ma, Xingzhou Martynov, Alexander Miller, Nicholas J. Mitchell, Robert F. Munoz-Torres, Monica Muszewska, Anna Oppert, Brenda Palli, Subba Reddy Panfilio, Kristen A. Pauchet, Yannick Perkin, Lindsey C. Petek, Marko Poelchau, Monica F. Record, Éric Rinehart, Joseph P. Robertson, Hugh M. Rosendale, Andrew J. Ruiz-Arroyo, Victor M. Smagghe, Guy Szendrei, Zsofia Thomas, Gregg W.C. Torson, Alex S. Vargas Jentzsch, Iris M. Weirauch, Matthew T. Yates, Ashley D. Yocum, George D. Yoon, June-Sun Richards, Stephen Sci Rep Article The Colorado potato beetle is one of the most challenging agricultural pests to manage. It has shown a spectacular ability to adapt to a variety of solanaceaeous plants and variable climates during its global invasion, and, notably, to rapidly evolve insecticide resistance. To examine evidence of rapid evolutionary change, and to understand the genetic basis of herbivory and insecticide resistance, we tested for structural and functional genomic changes relative to other arthropod species using genome sequencing, transcriptomics, and community annotation. Two factors that might facilitate rapid evolutionary change include transposable elements, which comprise at least 17% of the genome and are rapidly evolving compared to other Coleoptera, and high levels of nucleotide diversity in rapidly growing pest populations. Adaptations to plant feeding are evident in gene expansions and differential expression of digestive enzymes in gut tissues, as well as expansions of gustatory receptors for bitter tasting. Surprisingly, the suite of genes involved in insecticide resistance is similar to other beetles. Finally, duplications in the RNAi pathway might explain why Leptinotarsa decemlineata has high sensitivity to dsRNA. The L. decemlineata genome provides opportunities to investigate a broad range of phenotypes and to develop sustainable methods to control this widely successful pest. Nature Publishing Group UK 2018-01-31 /pmc/articles/PMC5792627/ /pubmed/29386578 http://dx.doi.org/10.1038/s41598-018-20154-1 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Schoville, Sean D.
Chen, Yolanda H.
Andersson, Martin N.
Benoit, Joshua B.
Bhandari, Anita
Bowsher, Julia H.
Brevik, Kristian
Cappelle, Kaat
Chen, Mei-Ju M.
Childers, Anna K.
Childers, Christopher
Christiaens, Olivier
Clements, Justin
Didion, Elise M.
Elpidina, Elena N.
Engsontia, Patamarerk
Friedrich, Markus
García-Robles, Inmaculada
Gibbs, Richard A.
Goswami, Chandan
Grapputo, Alessandro
Gruden, Kristina
Grynberg, Marcin
Henrissat, Bernard
Jennings, Emily C.
Jones, Jeffery W.
Kalsi, Megha
Khan, Sher A.
Kumar, Abhishek
Li, Fei
Lombard, Vincent
Ma, Xingzhou
Martynov, Alexander
Miller, Nicholas J.
Mitchell, Robert F.
Munoz-Torres, Monica
Muszewska, Anna
Oppert, Brenda
Palli, Subba Reddy
Panfilio, Kristen A.
Pauchet, Yannick
Perkin, Lindsey C.
Petek, Marko
Poelchau, Monica F.
Record, Éric
Rinehart, Joseph P.
Robertson, Hugh M.
Rosendale, Andrew J.
Ruiz-Arroyo, Victor M.
Smagghe, Guy
Szendrei, Zsofia
Thomas, Gregg W.C.
Torson, Alex S.
Vargas Jentzsch, Iris M.
Weirauch, Matthew T.
Yates, Ashley D.
Yocum, George D.
Yoon, June-Sun
Richards, Stephen
A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)
title A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)
title_full A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)
title_fullStr A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)
title_full_unstemmed A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)
title_short A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)
title_sort model species for agricultural pest genomics: the genome of the colorado potato beetle, leptinotarsa decemlineata (coleoptera: chrysomelidae)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5792627/
https://www.ncbi.nlm.nih.gov/pubmed/29386578
http://dx.doi.org/10.1038/s41598-018-20154-1
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AT lifei modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT lombardvincent modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT maxingzhou modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT martynovalexander modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT millernicholasj modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT mitchellrobertf modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT munoztorresmonica modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT muszewskaanna modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT oppertbrenda modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT pallisubbareddy modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT panfiliokristena modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT pauchetyannick modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT perkinlindseyc modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT petekmarko modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT poelchaumonicaf modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT recorderic modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT rinehartjosephp modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT robertsonhughm modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT rosendaleandrewj modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT ruizarroyovictorm modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT smaggheguy modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT szendreizsofia modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT thomasgreggwc modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT torsonalexs modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT vargasjentzschirism modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT weirauchmatthewt modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT yatesashleyd modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT yocumgeorged modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT yoonjunesun modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae
AT richardsstephen modelspeciesforagriculturalpestgenomicsthegenomeofthecoloradopotatobeetleleptinotarsadecemlineatacoleopterachrysomelidae