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Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species

The genus Tenacibaculum encompasses several species pathogenic for marine fish. Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” (Quotation marks denote species that have not been validly named.) were retrieved from skin lesions of farmed fish such as European sea bass or Atlantic salmon....

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Autores principales: Bridel, Sébastien, Olsen, Anne-Berit, Nilsen, Hanne, Bernardet, Jean-François, Achaz, Guillaume, Avendaño-Herrera, Ruben, Duchaud, Eric
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5793721/
https://www.ncbi.nlm.nih.gov/pubmed/29360975
http://dx.doi.org/10.1093/gbe/evy020
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author Bridel, Sébastien
Olsen, Anne-Berit
Nilsen, Hanne
Bernardet, Jean-François
Achaz, Guillaume
Avendaño-Herrera, Ruben
Duchaud, Eric
author_facet Bridel, Sébastien
Olsen, Anne-Berit
Nilsen, Hanne
Bernardet, Jean-François
Achaz, Guillaume
Avendaño-Herrera, Ruben
Duchaud, Eric
author_sort Bridel, Sébastien
collection PubMed
description The genus Tenacibaculum encompasses several species pathogenic for marine fish. Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” (Quotation marks denote species that have not been validly named.) were retrieved from skin lesions of farmed fish such as European sea bass or Atlantic salmon. They cause a condition referred to as tenacibaculosis and severe outbreaks and important fish losses have been reported in Spanish, Norwegian, and Chilean marine farms. We report here the draft genomes of the T. dicentrarchi and “T. finnmarkense” type strains. These genomes were compared with draft genomes from field isolates retrieved from Chile and Norway and with previously published Tenacibaculum genomes. We used Average Nucleotide Identity and core genome-based phylogeny as a proxy index for species boundary delineation. This work highlights evolution of closely related fish-pathogenic species and suggests that homologous recombination likely contributes to genome evolution. It also corrects the species affiliation of strain AYD7486TD claimed by Grothusen et al. (2016).
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spelling pubmed-57937212018-02-06 Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species Bridel, Sébastien Olsen, Anne-Berit Nilsen, Hanne Bernardet, Jean-François Achaz, Guillaume Avendaño-Herrera, Ruben Duchaud, Eric Genome Biol Evol Genome Report The genus Tenacibaculum encompasses several species pathogenic for marine fish. Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” (Quotation marks denote species that have not been validly named.) were retrieved from skin lesions of farmed fish such as European sea bass or Atlantic salmon. They cause a condition referred to as tenacibaculosis and severe outbreaks and important fish losses have been reported in Spanish, Norwegian, and Chilean marine farms. We report here the draft genomes of the T. dicentrarchi and “T. finnmarkense” type strains. These genomes were compared with draft genomes from field isolates retrieved from Chile and Norway and with previously published Tenacibaculum genomes. We used Average Nucleotide Identity and core genome-based phylogeny as a proxy index for species boundary delineation. This work highlights evolution of closely related fish-pathogenic species and suggests that homologous recombination likely contributes to genome evolution. It also corrects the species affiliation of strain AYD7486TD claimed by Grothusen et al. (2016). Oxford University Press 2018-01-19 /pmc/articles/PMC5793721/ /pubmed/29360975 http://dx.doi.org/10.1093/gbe/evy020 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Genome Report
Bridel, Sébastien
Olsen, Anne-Berit
Nilsen, Hanne
Bernardet, Jean-François
Achaz, Guillaume
Avendaño-Herrera, Ruben
Duchaud, Eric
Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species
title Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species
title_full Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species
title_fullStr Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species
title_full_unstemmed Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species
title_short Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species
title_sort comparative genomics of tenacibaculum dicentrarchi and “tenacibaculum finnmarkense” highlights intricate evolution of fish-pathogenic species
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5793721/
https://www.ncbi.nlm.nih.gov/pubmed/29360975
http://dx.doi.org/10.1093/gbe/evy020
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