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Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species
The genus Tenacibaculum encompasses several species pathogenic for marine fish. Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” (Quotation marks denote species that have not been validly named.) were retrieved from skin lesions of farmed fish such as European sea bass or Atlantic salmon....
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Oxford University Press
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5793721/ https://www.ncbi.nlm.nih.gov/pubmed/29360975 http://dx.doi.org/10.1093/gbe/evy020 |
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author | Bridel, Sébastien Olsen, Anne-Berit Nilsen, Hanne Bernardet, Jean-François Achaz, Guillaume Avendaño-Herrera, Ruben Duchaud, Eric |
author_facet | Bridel, Sébastien Olsen, Anne-Berit Nilsen, Hanne Bernardet, Jean-François Achaz, Guillaume Avendaño-Herrera, Ruben Duchaud, Eric |
author_sort | Bridel, Sébastien |
collection | PubMed |
description | The genus Tenacibaculum encompasses several species pathogenic for marine fish. Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” (Quotation marks denote species that have not been validly named.) were retrieved from skin lesions of farmed fish such as European sea bass or Atlantic salmon. They cause a condition referred to as tenacibaculosis and severe outbreaks and important fish losses have been reported in Spanish, Norwegian, and Chilean marine farms. We report here the draft genomes of the T. dicentrarchi and “T. finnmarkense” type strains. These genomes were compared with draft genomes from field isolates retrieved from Chile and Norway and with previously published Tenacibaculum genomes. We used Average Nucleotide Identity and core genome-based phylogeny as a proxy index for species boundary delineation. This work highlights evolution of closely related fish-pathogenic species and suggests that homologous recombination likely contributes to genome evolution. It also corrects the species affiliation of strain AYD7486TD claimed by Grothusen et al. (2016). |
format | Online Article Text |
id | pubmed-5793721 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-57937212018-02-06 Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species Bridel, Sébastien Olsen, Anne-Berit Nilsen, Hanne Bernardet, Jean-François Achaz, Guillaume Avendaño-Herrera, Ruben Duchaud, Eric Genome Biol Evol Genome Report The genus Tenacibaculum encompasses several species pathogenic for marine fish. Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” (Quotation marks denote species that have not been validly named.) were retrieved from skin lesions of farmed fish such as European sea bass or Atlantic salmon. They cause a condition referred to as tenacibaculosis and severe outbreaks and important fish losses have been reported in Spanish, Norwegian, and Chilean marine farms. We report here the draft genomes of the T. dicentrarchi and “T. finnmarkense” type strains. These genomes were compared with draft genomes from field isolates retrieved from Chile and Norway and with previously published Tenacibaculum genomes. We used Average Nucleotide Identity and core genome-based phylogeny as a proxy index for species boundary delineation. This work highlights evolution of closely related fish-pathogenic species and suggests that homologous recombination likely contributes to genome evolution. It also corrects the species affiliation of strain AYD7486TD claimed by Grothusen et al. (2016). Oxford University Press 2018-01-19 /pmc/articles/PMC5793721/ /pubmed/29360975 http://dx.doi.org/10.1093/gbe/evy020 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Genome Report Bridel, Sébastien Olsen, Anne-Berit Nilsen, Hanne Bernardet, Jean-François Achaz, Guillaume Avendaño-Herrera, Ruben Duchaud, Eric Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species |
title | Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species |
title_full | Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species |
title_fullStr | Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species |
title_full_unstemmed | Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species |
title_short | Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species |
title_sort | comparative genomics of tenacibaculum dicentrarchi and “tenacibaculum finnmarkense” highlights intricate evolution of fish-pathogenic species |
topic | Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5793721/ https://www.ncbi.nlm.nih.gov/pubmed/29360975 http://dx.doi.org/10.1093/gbe/evy020 |
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