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Comparing fixed sampling with minimizer sampling when using k-mer indexes to find maximal exact matches
Bioinformatics applications and pipelines increasingly use k-mer indexes to search for similar sequences. The major problem with k-mer indexes is that they require lots of memory. Sampling is often used to reduce index size and query time. Most applications use one of two major types of sampling: fi...
| Autores principales: | , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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Public Library of Science
2018
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5794061/ https://www.ncbi.nlm.nih.gov/pubmed/29389989 http://dx.doi.org/10.1371/journal.pone.0189960 |