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Perivascular Spaces Segmentation in Brain MRI Using Optimal 3D Filtering
Perivascular Spaces (PVS) are a feature of Small Vessel Disease (SVD), and are an important part of the brain’s circulation and glymphatic drainage system. Quantitative analysis of PVS on Magnetic Resonance Images (MRI) is important for understanding their relationship with neurological diseases. In...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5794857/ https://www.ncbi.nlm.nih.gov/pubmed/29391404 http://dx.doi.org/10.1038/s41598-018-19781-5 |
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author | Ballerini, Lucia Lovreglio, Ruggiero Valdés Hernández, Maria del C. Ramirez, Joel MacIntosh, Bradley J. Black, Sandra E. Wardlaw, Joanna M. |
author_facet | Ballerini, Lucia Lovreglio, Ruggiero Valdés Hernández, Maria del C. Ramirez, Joel MacIntosh, Bradley J. Black, Sandra E. Wardlaw, Joanna M. |
author_sort | Ballerini, Lucia |
collection | PubMed |
description | Perivascular Spaces (PVS) are a feature of Small Vessel Disease (SVD), and are an important part of the brain’s circulation and glymphatic drainage system. Quantitative analysis of PVS on Magnetic Resonance Images (MRI) is important for understanding their relationship with neurological diseases. In this work, we propose a segmentation technique based on the 3D Frangi filtering for extraction of PVS from MRI. We used ordered logit models and visual rating scales as alternative ground truth for Frangi filter parameter optimization and evaluation. We optimized and validated our proposed models on two independent cohorts, a dementia sample (N = 20) and patients who previously had mild to moderate stroke (N = 48). Results demonstrate the robustness and generalisability of our segmentation method. Segmentation-based PVS burden estimates correlated well with neuroradiological assessments (Spearman’s ρ = 0.74, p < 0.001), supporting the potential of our proposed method. |
format | Online Article Text |
id | pubmed-5794857 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-57948572018-02-12 Perivascular Spaces Segmentation in Brain MRI Using Optimal 3D Filtering Ballerini, Lucia Lovreglio, Ruggiero Valdés Hernández, Maria del C. Ramirez, Joel MacIntosh, Bradley J. Black, Sandra E. Wardlaw, Joanna M. Sci Rep Article Perivascular Spaces (PVS) are a feature of Small Vessel Disease (SVD), and are an important part of the brain’s circulation and glymphatic drainage system. Quantitative analysis of PVS on Magnetic Resonance Images (MRI) is important for understanding their relationship with neurological diseases. In this work, we propose a segmentation technique based on the 3D Frangi filtering for extraction of PVS from MRI. We used ordered logit models and visual rating scales as alternative ground truth for Frangi filter parameter optimization and evaluation. We optimized and validated our proposed models on two independent cohorts, a dementia sample (N = 20) and patients who previously had mild to moderate stroke (N = 48). Results demonstrate the robustness and generalisability of our segmentation method. Segmentation-based PVS burden estimates correlated well with neuroradiological assessments (Spearman’s ρ = 0.74, p < 0.001), supporting the potential of our proposed method. Nature Publishing Group UK 2018-02-01 /pmc/articles/PMC5794857/ /pubmed/29391404 http://dx.doi.org/10.1038/s41598-018-19781-5 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Ballerini, Lucia Lovreglio, Ruggiero Valdés Hernández, Maria del C. Ramirez, Joel MacIntosh, Bradley J. Black, Sandra E. Wardlaw, Joanna M. Perivascular Spaces Segmentation in Brain MRI Using Optimal 3D Filtering |
title | Perivascular Spaces Segmentation in Brain MRI Using Optimal 3D Filtering |
title_full | Perivascular Spaces Segmentation in Brain MRI Using Optimal 3D Filtering |
title_fullStr | Perivascular Spaces Segmentation in Brain MRI Using Optimal 3D Filtering |
title_full_unstemmed | Perivascular Spaces Segmentation in Brain MRI Using Optimal 3D Filtering |
title_short | Perivascular Spaces Segmentation in Brain MRI Using Optimal 3D Filtering |
title_sort | perivascular spaces segmentation in brain mri using optimal 3d filtering |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5794857/ https://www.ncbi.nlm.nih.gov/pubmed/29391404 http://dx.doi.org/10.1038/s41598-018-19781-5 |
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