Cargando…

Computational investigations of physicochemical, pharmacokinetic, toxicological properties and molecular docking of betulinic acid, a constituent of Corypha taliera (Roxb.) with Phospholipase A2 (PLA2)

BACKGROUND: Betulinic acid (BA) is a natural triterpenoid compound and exhibits a wide range of biological and medicinal properties including anti-inflammatory activity. Therefore, this theoretical investigation is performed to evaluate (a) physicochemical properties such as acid dissociation consta...

Descripción completa

Detalles Bibliográficos
Autores principales: Khan, Mohammad Firoz, Nahar, Nusrat, Rashid, Ridwan Bin, Chowdhury, Akhtaruzzaman, Rashid, Mohammad A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5795847/
https://www.ncbi.nlm.nih.gov/pubmed/29391000
http://dx.doi.org/10.1186/s12906-018-2116-x
_version_ 1783297377340227584
author Khan, Mohammad Firoz
Nahar, Nusrat
Rashid, Ridwan Bin
Chowdhury, Akhtaruzzaman
Rashid, Mohammad A.
author_facet Khan, Mohammad Firoz
Nahar, Nusrat
Rashid, Ridwan Bin
Chowdhury, Akhtaruzzaman
Rashid, Mohammad A.
author_sort Khan, Mohammad Firoz
collection PubMed
description BACKGROUND: Betulinic acid (BA) is a natural triterpenoid compound and exhibits a wide range of biological and medicinal properties including anti-inflammatory activity. Therefore, this theoretical investigation is performed to evaluate (a) physicochemical properties such as acid dissociation constant (pKa), distribution coefficient (logD), partition coefficient (logP), aqueous solubility (logS), solvation free energy, dipole moment, polarizability, hyperpolarizability and different reactivity descriptors, (b) pharmacokinetic properties like human intestinal absorption (HIA), cellular permeability, skin permeability (P(Skin)), plasma protein binding (PPB), penetration of the blood brain barrier (BBB), (c) toxicological properties including mutagenicity, carcinogenicity, risk of inhibition of hERG gene and (d) molecular mechanism of anti-inflammatory action which will aid the development of analytical method and the synthesis of BA derivatives. METHODS: The physicochemical properties were calculated using MarvinSketch 15.6.29 and Gaussian 09 software package. The pharmacokinetic and toxicological properties were calculated on online server PreADMET. Further, the molecular docking study was conducted on AutoDock vina in PyRx 0.8. RESULTS: The aqueous solubility increased with increasing pH due to the ionization of BA leading to decrease in distribution coefficient. The solvation energies in water, dimethyl sulfoxide (DMSO), acetonitrile, n-octanol, chloroform and carbon tetrachloride were − 41.74 kJ/mol, − 53.80 kJ/mol, − 66.27 kJ/mol, − 69.64 kJ/mol, − 65.96 kJ/mol and − 60.13 kJ/mol, respectively. From the results of polarizability and softness, it was clear that BA is less stable and hence, kinetically more reactive in water. BA demonstrated good human intestinal absorption (HIA) and moderate cellular permeability. Further, BA also exhibited positive CNS activity due to high permeability through BBB. The toxicological study revealed that BA was a mutagenic compound but noncarcinogenic in mice model. Moreover, molecular docking study of BA with PLA2 revealed that BA interacts with GLY22 & GLY29 through hydrogen bond formation and LEU2, PHE5, HIS6, ALA17, ALA18, HIS47 and TYR51 through different types of hydrophobic interactions. The binding affinity of BA was − 41.00 kJ/mol which is comparable to the binding affinity of potent inhibitor 6-Phenyl-4(R)-(7-Phenyl-heptanoylamino)-hexanoic acid (BR4) (− 33.89 kJ/mol). CONCLUSIONS: Our computed properties may assist the development of analytical method to assay BA or to develop BA derivatives with better pharmacokinetic and toxicological profile.
format Online
Article
Text
id pubmed-5795847
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-57958472018-02-12 Computational investigations of physicochemical, pharmacokinetic, toxicological properties and molecular docking of betulinic acid, a constituent of Corypha taliera (Roxb.) with Phospholipase A2 (PLA2) Khan, Mohammad Firoz Nahar, Nusrat Rashid, Ridwan Bin Chowdhury, Akhtaruzzaman Rashid, Mohammad A. BMC Complement Altern Med Research Article BACKGROUND: Betulinic acid (BA) is a natural triterpenoid compound and exhibits a wide range of biological and medicinal properties including anti-inflammatory activity. Therefore, this theoretical investigation is performed to evaluate (a) physicochemical properties such as acid dissociation constant (pKa), distribution coefficient (logD), partition coefficient (logP), aqueous solubility (logS), solvation free energy, dipole moment, polarizability, hyperpolarizability and different reactivity descriptors, (b) pharmacokinetic properties like human intestinal absorption (HIA), cellular permeability, skin permeability (P(Skin)), plasma protein binding (PPB), penetration of the blood brain barrier (BBB), (c) toxicological properties including mutagenicity, carcinogenicity, risk of inhibition of hERG gene and (d) molecular mechanism of anti-inflammatory action which will aid the development of analytical method and the synthesis of BA derivatives. METHODS: The physicochemical properties were calculated using MarvinSketch 15.6.29 and Gaussian 09 software package. The pharmacokinetic and toxicological properties were calculated on online server PreADMET. Further, the molecular docking study was conducted on AutoDock vina in PyRx 0.8. RESULTS: The aqueous solubility increased with increasing pH due to the ionization of BA leading to decrease in distribution coefficient. The solvation energies in water, dimethyl sulfoxide (DMSO), acetonitrile, n-octanol, chloroform and carbon tetrachloride were − 41.74 kJ/mol, − 53.80 kJ/mol, − 66.27 kJ/mol, − 69.64 kJ/mol, − 65.96 kJ/mol and − 60.13 kJ/mol, respectively. From the results of polarizability and softness, it was clear that BA is less stable and hence, kinetically more reactive in water. BA demonstrated good human intestinal absorption (HIA) and moderate cellular permeability. Further, BA also exhibited positive CNS activity due to high permeability through BBB. The toxicological study revealed that BA was a mutagenic compound but noncarcinogenic in mice model. Moreover, molecular docking study of BA with PLA2 revealed that BA interacts with GLY22 & GLY29 through hydrogen bond formation and LEU2, PHE5, HIS6, ALA17, ALA18, HIS47 and TYR51 through different types of hydrophobic interactions. The binding affinity of BA was − 41.00 kJ/mol which is comparable to the binding affinity of potent inhibitor 6-Phenyl-4(R)-(7-Phenyl-heptanoylamino)-hexanoic acid (BR4) (− 33.89 kJ/mol). CONCLUSIONS: Our computed properties may assist the development of analytical method to assay BA or to develop BA derivatives with better pharmacokinetic and toxicological profile. BioMed Central 2018-02-02 /pmc/articles/PMC5795847/ /pubmed/29391000 http://dx.doi.org/10.1186/s12906-018-2116-x Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Khan, Mohammad Firoz
Nahar, Nusrat
Rashid, Ridwan Bin
Chowdhury, Akhtaruzzaman
Rashid, Mohammad A.
Computational investigations of physicochemical, pharmacokinetic, toxicological properties and molecular docking of betulinic acid, a constituent of Corypha taliera (Roxb.) with Phospholipase A2 (PLA2)
title Computational investigations of physicochemical, pharmacokinetic, toxicological properties and molecular docking of betulinic acid, a constituent of Corypha taliera (Roxb.) with Phospholipase A2 (PLA2)
title_full Computational investigations of physicochemical, pharmacokinetic, toxicological properties and molecular docking of betulinic acid, a constituent of Corypha taliera (Roxb.) with Phospholipase A2 (PLA2)
title_fullStr Computational investigations of physicochemical, pharmacokinetic, toxicological properties and molecular docking of betulinic acid, a constituent of Corypha taliera (Roxb.) with Phospholipase A2 (PLA2)
title_full_unstemmed Computational investigations of physicochemical, pharmacokinetic, toxicological properties and molecular docking of betulinic acid, a constituent of Corypha taliera (Roxb.) with Phospholipase A2 (PLA2)
title_short Computational investigations of physicochemical, pharmacokinetic, toxicological properties and molecular docking of betulinic acid, a constituent of Corypha taliera (Roxb.) with Phospholipase A2 (PLA2)
title_sort computational investigations of physicochemical, pharmacokinetic, toxicological properties and molecular docking of betulinic acid, a constituent of corypha taliera (roxb.) with phospholipase a2 (pla2)
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5795847/
https://www.ncbi.nlm.nih.gov/pubmed/29391000
http://dx.doi.org/10.1186/s12906-018-2116-x
work_keys_str_mv AT khanmohammadfiroz computationalinvestigationsofphysicochemicalpharmacokinetictoxicologicalpropertiesandmoleculardockingofbetulinicacidaconstituentofcoryphatalieraroxbwithphospholipasea2pla2
AT naharnusrat computationalinvestigationsofphysicochemicalpharmacokinetictoxicologicalpropertiesandmoleculardockingofbetulinicacidaconstituentofcoryphatalieraroxbwithphospholipasea2pla2
AT rashidridwanbin computationalinvestigationsofphysicochemicalpharmacokinetictoxicologicalpropertiesandmoleculardockingofbetulinicacidaconstituentofcoryphatalieraroxbwithphospholipasea2pla2
AT chowdhuryakhtaruzzaman computationalinvestigationsofphysicochemicalpharmacokinetictoxicologicalpropertiesandmoleculardockingofbetulinicacidaconstituentofcoryphatalieraroxbwithphospholipasea2pla2
AT rashidmohammada computationalinvestigationsofphysicochemicalpharmacokinetictoxicologicalpropertiesandmoleculardockingofbetulinicacidaconstituentofcoryphatalieraroxbwithphospholipasea2pla2