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Bond-length distributions for ions bonded to oxygen: results for the non-metals and discussion of lone-pair stereoactivity and the polymerization of PO(4)

Bond-length distributions are examined for three configurations of the H(+) ion, 16 configurations of the group 14–16 non-metal ions and seven configurations of the group 17 ions bonded to oxygen, for 223 coordination polyhedra and 452 bond distances for the H(+) ion, 5957 coordination polyhedra and...

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Autores principales: Gagné, Olivier Charles, Hawthorne, Frank Christopher
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798399/
http://dx.doi.org/10.1107/S2052520617017541
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author Gagné, Olivier Charles
Hawthorne, Frank Christopher
author_facet Gagné, Olivier Charles
Hawthorne, Frank Christopher
author_sort Gagné, Olivier Charles
collection PubMed
description Bond-length distributions are examined for three configurations of the H(+) ion, 16 configurations of the group 14–16 non-metal ions and seven configurations of the group 17 ions bonded to oxygen, for 223 coordination polyhedra and 452 bond distances for the H(+) ion, 5957 coordination polyhedra and 22 784 bond distances for the group 14–16 non-metal ions, and 248 coordination polyhedra and 1394 bond distances for the group 17 non-metal ions. H⋯O and O—H + H⋯O distances correlate with O⋯O distance (R (2) = 0.94 and 0.96): H⋯O = 1.273 × O⋯O – 1.717 Å; O—H + H⋯O = 1.068 × O⋯O – 0.170 Å. These equations may be used to locate the hydrogen atom more accurately in a structure refined by X-ray diffraction. For non-metal elements that occur with lone-pair electrons, the most observed state between the n versus n+2 oxidation state is that of highest oxidation state for period 3 cations, and lowest oxidation state for period 4 and 5 cations when bonded to O(2−). Observed O—X—O bond angles indicate that the period 3 non-metal ions P(3+), S(4+), Cl(3+) and Cl(5+) are lone-pair seteroactive when bonded to O(2−), even though they do not form secondary bonds. There is no strong correlation between the degree of lone-pair stereoactivity and coordination number when including secondary bonds. There is no correlation between lone-pair stereoactivity and bond-valence sum at the central cation. In synthetic compounds, PO(4) polymerizes via one or two bridging oxygen atoms, but not by three. Partitioning our PO(4) dataset shows that multi-modality in the distribution of bond lengths is caused by the different bond-valence constraints that arise for O(br) = 0, 1 and 2. For strongly bonded cations, i.e. oxyanions, the most probable cause of mean bond length variation is the effect of structure type, i.e. stress induced by the inability of a structure to follow its a priori bond lengths. For ions with stereoactive lone-pair electrons, the most probable cause of variation is bond-length distortion.
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spelling pubmed-57983992018-02-12 Bond-length distributions for ions bonded to oxygen: results for the non-metals and discussion of lone-pair stereoactivity and the polymerization of PO(4) Gagné, Olivier Charles Hawthorne, Frank Christopher Acta Crystallogr B Struct Sci Cryst Eng Mater Research Papers Bond-length distributions are examined for three configurations of the H(+) ion, 16 configurations of the group 14–16 non-metal ions and seven configurations of the group 17 ions bonded to oxygen, for 223 coordination polyhedra and 452 bond distances for the H(+) ion, 5957 coordination polyhedra and 22 784 bond distances for the group 14–16 non-metal ions, and 248 coordination polyhedra and 1394 bond distances for the group 17 non-metal ions. H⋯O and O—H + H⋯O distances correlate with O⋯O distance (R (2) = 0.94 and 0.96): H⋯O = 1.273 × O⋯O – 1.717 Å; O—H + H⋯O = 1.068 × O⋯O – 0.170 Å. These equations may be used to locate the hydrogen atom more accurately in a structure refined by X-ray diffraction. For non-metal elements that occur with lone-pair electrons, the most observed state between the n versus n+2 oxidation state is that of highest oxidation state for period 3 cations, and lowest oxidation state for period 4 and 5 cations when bonded to O(2−). Observed O—X—O bond angles indicate that the period 3 non-metal ions P(3+), S(4+), Cl(3+) and Cl(5+) are lone-pair seteroactive when bonded to O(2−), even though they do not form secondary bonds. There is no strong correlation between the degree of lone-pair stereoactivity and coordination number when including secondary bonds. There is no correlation between lone-pair stereoactivity and bond-valence sum at the central cation. In synthetic compounds, PO(4) polymerizes via one or two bridging oxygen atoms, but not by three. Partitioning our PO(4) dataset shows that multi-modality in the distribution of bond lengths is caused by the different bond-valence constraints that arise for O(br) = 0, 1 and 2. For strongly bonded cations, i.e. oxyanions, the most probable cause of mean bond length variation is the effect of structure type, i.e. stress induced by the inability of a structure to follow its a priori bond lengths. For ions with stereoactive lone-pair electrons, the most probable cause of variation is bond-length distortion. International Union of Crystallography 2018-01-13 /pmc/articles/PMC5798399/ http://dx.doi.org/10.1107/S2052520617017541 Text en © Gagné and Hawthorne 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Research Papers
Gagné, Olivier Charles
Hawthorne, Frank Christopher
Bond-length distributions for ions bonded to oxygen: results for the non-metals and discussion of lone-pair stereoactivity and the polymerization of PO(4)
title Bond-length distributions for ions bonded to oxygen: results for the non-metals and discussion of lone-pair stereoactivity and the polymerization of PO(4)
title_full Bond-length distributions for ions bonded to oxygen: results for the non-metals and discussion of lone-pair stereoactivity and the polymerization of PO(4)
title_fullStr Bond-length distributions for ions bonded to oxygen: results for the non-metals and discussion of lone-pair stereoactivity and the polymerization of PO(4)
title_full_unstemmed Bond-length distributions for ions bonded to oxygen: results for the non-metals and discussion of lone-pair stereoactivity and the polymerization of PO(4)
title_short Bond-length distributions for ions bonded to oxygen: results for the non-metals and discussion of lone-pair stereoactivity and the polymerization of PO(4)
title_sort bond-length distributions for ions bonded to oxygen: results for the non-metals and discussion of lone-pair stereoactivity and the polymerization of po(4)
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798399/
http://dx.doi.org/10.1107/S2052520617017541
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