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Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography

Time-resolved serial femtosecond crystallography with X-ray free electron laser (XFEL) holds the potential to view fast reactions occurring at near-physiological temperature. However, production and characterization of homogeneous micron-sized protein crystals at high density remain a bottleneck, du...

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Autores principales: Lee, Dan Bi, Kim, Jong-Min, Seok, Jong Hyeon, Lee, Ji-Hye, Jo, Jae Deok, Mun, Ji Young, Conrad, Chelsie, Coe, Jesse, Nelson, Garrett, Hogue, Brenda, White, Thomas A., Zatsepin, Nadia, Weierstall, Uwe, Barty, Anton, Chapman, Henry, Fromme, Petra, Spence, John, Chung, Mi Sook, Oh, Chang-Hyun, Kim, Kyung Hyun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5803221/
https://www.ncbi.nlm.nih.gov/pubmed/29416086
http://dx.doi.org/10.1038/s41598-018-20899-9
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author Lee, Dan Bi
Kim, Jong-Min
Seok, Jong Hyeon
Lee, Ji-Hye
Jo, Jae Deok
Mun, Ji Young
Conrad, Chelsie
Coe, Jesse
Nelson, Garrett
Hogue, Brenda
White, Thomas A.
Zatsepin, Nadia
Weierstall, Uwe
Barty, Anton
Chapman, Henry
Fromme, Petra
Spence, John
Chung, Mi Sook
Oh, Chang-Hyun
Kim, Kyung Hyun
author_facet Lee, Dan Bi
Kim, Jong-Min
Seok, Jong Hyeon
Lee, Ji-Hye
Jo, Jae Deok
Mun, Ji Young
Conrad, Chelsie
Coe, Jesse
Nelson, Garrett
Hogue, Brenda
White, Thomas A.
Zatsepin, Nadia
Weierstall, Uwe
Barty, Anton
Chapman, Henry
Fromme, Petra
Spence, John
Chung, Mi Sook
Oh, Chang-Hyun
Kim, Kyung Hyun
author_sort Lee, Dan Bi
collection PubMed
description Time-resolved serial femtosecond crystallography with X-ray free electron laser (XFEL) holds the potential to view fast reactions occurring at near-physiological temperature. However, production and characterization of homogeneous micron-sized protein crystals at high density remain a bottleneck, due to the lack of the necessary equipments in ordinary laboratories. We describe here supersaturation-controlled microcrystallization and visualization and analysis tools that can be easily used in any laboratory. The microcrystallization conditions of the influenza virus hemagglutinin were initially obtained with low reproducibility, which was improved by employing a rapid evaporation of hanging drops. Supersaturation-controlled microcrystallization was then developed in a vapor diffusion mode, where supersaturation was induced by evaporation in hanging drops sequentially for durations ranging from 30 sec to 3 min, depending on the protein. It was applied successfully to the microcrystal formation of lysozyme, ferritin and hemagglutinin with high density. Moreover, visualization and analysis tools were developed to characterize the microcrystals observed by light microscopy. The size and density distributions of microcrystals analyzed by the tools were found to be consistent with the results of manual analysis, further validated by high-resolution microscopic analyses. Our supersaturation-controlled microcrystallization and visualization and analysis tools will provide universal access to successful XFEL studies.
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spelling pubmed-58032212018-02-14 Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography Lee, Dan Bi Kim, Jong-Min Seok, Jong Hyeon Lee, Ji-Hye Jo, Jae Deok Mun, Ji Young Conrad, Chelsie Coe, Jesse Nelson, Garrett Hogue, Brenda White, Thomas A. Zatsepin, Nadia Weierstall, Uwe Barty, Anton Chapman, Henry Fromme, Petra Spence, John Chung, Mi Sook Oh, Chang-Hyun Kim, Kyung Hyun Sci Rep Article Time-resolved serial femtosecond crystallography with X-ray free electron laser (XFEL) holds the potential to view fast reactions occurring at near-physiological temperature. However, production and characterization of homogeneous micron-sized protein crystals at high density remain a bottleneck, due to the lack of the necessary equipments in ordinary laboratories. We describe here supersaturation-controlled microcrystallization and visualization and analysis tools that can be easily used in any laboratory. The microcrystallization conditions of the influenza virus hemagglutinin were initially obtained with low reproducibility, which was improved by employing a rapid evaporation of hanging drops. Supersaturation-controlled microcrystallization was then developed in a vapor diffusion mode, where supersaturation was induced by evaporation in hanging drops sequentially for durations ranging from 30 sec to 3 min, depending on the protein. It was applied successfully to the microcrystal formation of lysozyme, ferritin and hemagglutinin with high density. Moreover, visualization and analysis tools were developed to characterize the microcrystals observed by light microscopy. The size and density distributions of microcrystals analyzed by the tools were found to be consistent with the results of manual analysis, further validated by high-resolution microscopic analyses. Our supersaturation-controlled microcrystallization and visualization and analysis tools will provide universal access to successful XFEL studies. Nature Publishing Group UK 2018-02-07 /pmc/articles/PMC5803221/ /pubmed/29416086 http://dx.doi.org/10.1038/s41598-018-20899-9 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Lee, Dan Bi
Kim, Jong-Min
Seok, Jong Hyeon
Lee, Ji-Hye
Jo, Jae Deok
Mun, Ji Young
Conrad, Chelsie
Coe, Jesse
Nelson, Garrett
Hogue, Brenda
White, Thomas A.
Zatsepin, Nadia
Weierstall, Uwe
Barty, Anton
Chapman, Henry
Fromme, Petra
Spence, John
Chung, Mi Sook
Oh, Chang-Hyun
Kim, Kyung Hyun
Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography
title Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography
title_full Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography
title_fullStr Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography
title_full_unstemmed Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography
title_short Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography
title_sort supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5803221/
https://www.ncbi.nlm.nih.gov/pubmed/29416086
http://dx.doi.org/10.1038/s41598-018-20899-9
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