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Machine learning of correlated dihedral potentials for atomistic molecular force fields
Computer simulation increasingly complements experimental efforts to describe nanoscale structure formation. Molecular mechanics simulations and related computational methods fundamentally rely on the accuracy of classical atomistic force fields for the evaluation of inter- and intramolecular energi...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5803249/ https://www.ncbi.nlm.nih.gov/pubmed/29416116 http://dx.doi.org/10.1038/s41598-018-21070-0 |
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author | Friederich, Pascal Konrad, Manuel Strunk, Timo Wenzel, Wolfgang |
author_facet | Friederich, Pascal Konrad, Manuel Strunk, Timo Wenzel, Wolfgang |
author_sort | Friederich, Pascal |
collection | PubMed |
description | Computer simulation increasingly complements experimental efforts to describe nanoscale structure formation. Molecular mechanics simulations and related computational methods fundamentally rely on the accuracy of classical atomistic force fields for the evaluation of inter- and intramolecular energies. One indispensable component of such force fields, in particular for large organic molecules, is the accuracy of molecule-specific dihedral potentials which are the key determinants of molecular flexibility. We show in this work that non-local correlations of dihedral potentials play a decisive role in the description of the total molecular energy—an effect which is neglected in most state-of-the-art dihedral force fields. We furthermore present an efficient machine learning approach to compute intramolecular conformational energies. We demonstrate with the example of α-NPD, a molecule frequently used in organic electronics, that this approach outperforms traditional force fields by decreasing the mean absolute deviations by one order of magnitude to values smaller than 0.37 kcal/mol (16.0 meV) per dihedral angle. |
format | Online Article Text |
id | pubmed-5803249 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-58032492018-02-14 Machine learning of correlated dihedral potentials for atomistic molecular force fields Friederich, Pascal Konrad, Manuel Strunk, Timo Wenzel, Wolfgang Sci Rep Article Computer simulation increasingly complements experimental efforts to describe nanoscale structure formation. Molecular mechanics simulations and related computational methods fundamentally rely on the accuracy of classical atomistic force fields for the evaluation of inter- and intramolecular energies. One indispensable component of such force fields, in particular for large organic molecules, is the accuracy of molecule-specific dihedral potentials which are the key determinants of molecular flexibility. We show in this work that non-local correlations of dihedral potentials play a decisive role in the description of the total molecular energy—an effect which is neglected in most state-of-the-art dihedral force fields. We furthermore present an efficient machine learning approach to compute intramolecular conformational energies. We demonstrate with the example of α-NPD, a molecule frequently used in organic electronics, that this approach outperforms traditional force fields by decreasing the mean absolute deviations by one order of magnitude to values smaller than 0.37 kcal/mol (16.0 meV) per dihedral angle. Nature Publishing Group UK 2018-02-07 /pmc/articles/PMC5803249/ /pubmed/29416116 http://dx.doi.org/10.1038/s41598-018-21070-0 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Friederich, Pascal Konrad, Manuel Strunk, Timo Wenzel, Wolfgang Machine learning of correlated dihedral potentials for atomistic molecular force fields |
title | Machine learning of correlated dihedral potentials for atomistic molecular force fields |
title_full | Machine learning of correlated dihedral potentials for atomistic molecular force fields |
title_fullStr | Machine learning of correlated dihedral potentials for atomistic molecular force fields |
title_full_unstemmed | Machine learning of correlated dihedral potentials for atomistic molecular force fields |
title_short | Machine learning of correlated dihedral potentials for atomistic molecular force fields |
title_sort | machine learning of correlated dihedral potentials for atomistic molecular force fields |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5803249/ https://www.ncbi.nlm.nih.gov/pubmed/29416116 http://dx.doi.org/10.1038/s41598-018-21070-0 |
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