Cargando…

Moving to 3D: relationships between coral planar area, surface area and volume

Coral reefs are a valuable and vulnerable marine ecosystem. The structure of coral reefs influences their health and ability to fulfill ecosystem functions and services. However, monitoring reef corals largely relies on 1D or 2D estimates of coral cover and abundance that overlook change in ecologic...

Descripción completa

Detalles Bibliográficos
Autores principales: House, Jenny E., Brambilla, Viviana, Bidaut, Luc M., Christie, Alec P., Pizarro, Oscar, Madin, Joshua S., Dornelas, Maria
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5806594/
https://www.ncbi.nlm.nih.gov/pubmed/29435392
http://dx.doi.org/10.7717/peerj.4280
_version_ 1783299155756580864
author House, Jenny E.
Brambilla, Viviana
Bidaut, Luc M.
Christie, Alec P.
Pizarro, Oscar
Madin, Joshua S.
Dornelas, Maria
author_facet House, Jenny E.
Brambilla, Viviana
Bidaut, Luc M.
Christie, Alec P.
Pizarro, Oscar
Madin, Joshua S.
Dornelas, Maria
author_sort House, Jenny E.
collection PubMed
description Coral reefs are a valuable and vulnerable marine ecosystem. The structure of coral reefs influences their health and ability to fulfill ecosystem functions and services. However, monitoring reef corals largely relies on 1D or 2D estimates of coral cover and abundance that overlook change in ecologically significant aspects of the reefs because they do not incorporate vertical or volumetric information. This study explores the relationship between 2D and 3D metrics of coral size. We show that surface area and volume scale consistently with planar area, albeit with morphotype specific conversion parameters. We use a photogrammetric approach using open-source software to estimate the ability of photogrammetry to provide measurement estimates of corals in 3D. Technological developments have made photogrammetry a valid and practical technique for studying coral reefs. We anticipate that these techniques for moving coral research from 2D into 3D will facilitate answering ecological questions by incorporating the 3rd dimension into monitoring.
format Online
Article
Text
id pubmed-5806594
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher PeerJ Inc.
record_format MEDLINE/PubMed
spelling pubmed-58065942018-02-12 Moving to 3D: relationships between coral planar area, surface area and volume House, Jenny E. Brambilla, Viviana Bidaut, Luc M. Christie, Alec P. Pizarro, Oscar Madin, Joshua S. Dornelas, Maria PeerJ Biodiversity Coral reefs are a valuable and vulnerable marine ecosystem. The structure of coral reefs influences their health and ability to fulfill ecosystem functions and services. However, monitoring reef corals largely relies on 1D or 2D estimates of coral cover and abundance that overlook change in ecologically significant aspects of the reefs because they do not incorporate vertical or volumetric information. This study explores the relationship between 2D and 3D metrics of coral size. We show that surface area and volume scale consistently with planar area, albeit with morphotype specific conversion parameters. We use a photogrammetric approach using open-source software to estimate the ability of photogrammetry to provide measurement estimates of corals in 3D. Technological developments have made photogrammetry a valid and practical technique for studying coral reefs. We anticipate that these techniques for moving coral research from 2D into 3D will facilitate answering ecological questions by incorporating the 3rd dimension into monitoring. PeerJ Inc. 2018-02-06 /pmc/articles/PMC5806594/ /pubmed/29435392 http://dx.doi.org/10.7717/peerj.4280 Text en ©2018 House et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Biodiversity
House, Jenny E.
Brambilla, Viviana
Bidaut, Luc M.
Christie, Alec P.
Pizarro, Oscar
Madin, Joshua S.
Dornelas, Maria
Moving to 3D: relationships between coral planar area, surface area and volume
title Moving to 3D: relationships between coral planar area, surface area and volume
title_full Moving to 3D: relationships between coral planar area, surface area and volume
title_fullStr Moving to 3D: relationships between coral planar area, surface area and volume
title_full_unstemmed Moving to 3D: relationships between coral planar area, surface area and volume
title_short Moving to 3D: relationships between coral planar area, surface area and volume
title_sort moving to 3d: relationships between coral planar area, surface area and volume
topic Biodiversity
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5806594/
https://www.ncbi.nlm.nih.gov/pubmed/29435392
http://dx.doi.org/10.7717/peerj.4280
work_keys_str_mv AT housejennye movingto3drelationshipsbetweencoralplanarareasurfaceareaandvolume
AT brambillaviviana movingto3drelationshipsbetweencoralplanarareasurfaceareaandvolume
AT bidautlucm movingto3drelationshipsbetweencoralplanarareasurfaceareaandvolume
AT christiealecp movingto3drelationshipsbetweencoralplanarareasurfaceareaandvolume
AT pizarrooscar movingto3drelationshipsbetweencoralplanarareasurfaceareaandvolume
AT madinjoshuas movingto3drelationshipsbetweencoralplanarareasurfaceareaandvolume
AT dornelasmaria movingto3drelationshipsbetweencoralplanarareasurfaceareaandvolume