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CellCycleTRACER accounts for cell cycle and volume in mass cytometry data

Recent studies have shown that cell cycle and cell volume are confounding factors when studying biological phenomena in single cells. Here we present a combined experimental and computational method, CellCycleTRACER, to account for these factors in mass cytometry data. CellCycleTRACER is applied to...

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Detalles Bibliográficos
Autores principales: Rapsomaniki, Maria Anna, Lun, Xiao-Kang, Woerner, Stefan, Laumanns, Marco, Bodenmiller, Bernd, Martínez, María Rodríguez
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5809393/
https://www.ncbi.nlm.nih.gov/pubmed/29434325
http://dx.doi.org/10.1038/s41467-018-03005-5
Descripción
Sumario:Recent studies have shown that cell cycle and cell volume are confounding factors when studying biological phenomena in single cells. Here we present a combined experimental and computational method, CellCycleTRACER, to account for these factors in mass cytometry data. CellCycleTRACER is applied to mass cytometry data collected on three different cell types during a TNFα stimulation time-course. CellCycleTRACER reveals signaling relationships and cell heterogeneity that were otherwise masked.