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Fungal Stress Database (FSD)––a repository of fungal stress physiological data

The construction of the Fungal Stress Database (FSD) was initiated and fueled by two major goals. At first, some outstandingly important groups of filamentous fungi including the aspergilli possess remarkable capabilities to adapt to a wide spectrum of environmental stress conditions but the underly...

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Autores principales: Orosz, Erzsébet, van de Wiele, Nathalie, Emri, Tamás, Zhou, Miaomiao, Robert, Vincent, de Vries, Ronald P, Pócsi, István
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5810435/
https://www.ncbi.nlm.nih.gov/pubmed/29688353
http://dx.doi.org/10.1093/database/bay009
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author Orosz, Erzsébet
van de Wiele, Nathalie
Emri, Tamás
Zhou, Miaomiao
Robert, Vincent
de Vries, Ronald P
Pócsi, István
author_facet Orosz, Erzsébet
van de Wiele, Nathalie
Emri, Tamás
Zhou, Miaomiao
Robert, Vincent
de Vries, Ronald P
Pócsi, István
author_sort Orosz, Erzsébet
collection PubMed
description The construction of the Fungal Stress Database (FSD) was initiated and fueled by two major goals. At first, some outstandingly important groups of filamentous fungi including the aspergilli possess remarkable capabilities to adapt to a wide spectrum of environmental stress conditions but the underlying mechanisms of this stress tolerance have remained yet to be elucidated. Furthermore, the lack of any satisfactory interlaboratory standardization of stress assays, e.g. the widely used stress agar plate experiments, often hinders the direct comparison and discussion of stress physiological data gained for various fungal species by different research groups. In order to overcome these difficulties and to promote multilevel, e.g. combined comparative physiology-based and comparative genomics-based, stress research in filamentous fungi, we constructed FSD, which currently stores 1412 photos taken on Aspergillus colonies grown under precisely defined stress conditions. This study involved altogether 18 Aspergillus strains representing 17 species with two different strains for Aspergillus niger and covered six different stress conditions. Stress treatments were selected considering the frequency of various stress tolerance studies published in the last decade in the aspergilli and included oxidative (H(2)O(2), menadione sodium bisulphite), high-osmolarity (NaCl, sorbitol), cell wall integrity (Congo Red) and heavy metal (CdCl(2)) stress exposures. In the future, we would like to expand this database to accommodate further fungal species and stress treatments. URL: http://www.fung-stress.org/
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spelling pubmed-58104352018-02-15 Fungal Stress Database (FSD)––a repository of fungal stress physiological data Orosz, Erzsébet van de Wiele, Nathalie Emri, Tamás Zhou, Miaomiao Robert, Vincent de Vries, Ronald P Pócsi, István Database (Oxford) Original Article The construction of the Fungal Stress Database (FSD) was initiated and fueled by two major goals. At first, some outstandingly important groups of filamentous fungi including the aspergilli possess remarkable capabilities to adapt to a wide spectrum of environmental stress conditions but the underlying mechanisms of this stress tolerance have remained yet to be elucidated. Furthermore, the lack of any satisfactory interlaboratory standardization of stress assays, e.g. the widely used stress agar plate experiments, often hinders the direct comparison and discussion of stress physiological data gained for various fungal species by different research groups. In order to overcome these difficulties and to promote multilevel, e.g. combined comparative physiology-based and comparative genomics-based, stress research in filamentous fungi, we constructed FSD, which currently stores 1412 photos taken on Aspergillus colonies grown under precisely defined stress conditions. This study involved altogether 18 Aspergillus strains representing 17 species with two different strains for Aspergillus niger and covered six different stress conditions. Stress treatments were selected considering the frequency of various stress tolerance studies published in the last decade in the aspergilli and included oxidative (H(2)O(2), menadione sodium bisulphite), high-osmolarity (NaCl, sorbitol), cell wall integrity (Congo Red) and heavy metal (CdCl(2)) stress exposures. In the future, we would like to expand this database to accommodate further fungal species and stress treatments. URL: http://www.fung-stress.org/ Oxford University Press 2018-02-12 /pmc/articles/PMC5810435/ /pubmed/29688353 http://dx.doi.org/10.1093/database/bay009 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Orosz, Erzsébet
van de Wiele, Nathalie
Emri, Tamás
Zhou, Miaomiao
Robert, Vincent
de Vries, Ronald P
Pócsi, István
Fungal Stress Database (FSD)––a repository of fungal stress physiological data
title Fungal Stress Database (FSD)––a repository of fungal stress physiological data
title_full Fungal Stress Database (FSD)––a repository of fungal stress physiological data
title_fullStr Fungal Stress Database (FSD)––a repository of fungal stress physiological data
title_full_unstemmed Fungal Stress Database (FSD)––a repository of fungal stress physiological data
title_short Fungal Stress Database (FSD)––a repository of fungal stress physiological data
title_sort fungal stress database (fsd)––a repository of fungal stress physiological data
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5810435/
https://www.ncbi.nlm.nih.gov/pubmed/29688353
http://dx.doi.org/10.1093/database/bay009
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