Cargando…
The Circular RNA Profiles of Colorectal Tumor Metastatic Cells
Circular RNAs (circRNAs) have been reported that can be used as biomarkers for colorectal cancers (CRC) and other types of tumors. However, a limited number of studies have been performed investigating the potential role of circRNAs in tumor metastasis. Here, we examined the circRNAs in two CRC cell...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5811837/ https://www.ncbi.nlm.nih.gov/pubmed/29479369 http://dx.doi.org/10.3389/fgene.2018.00034 |
_version_ | 1783299930160365568 |
---|---|
author | Jiang, Weiqin Zhang, Xingchen Chu, Qinjie Lu, Sen Zhou, Linfu Lu, Xingang Liu, Chen Mao, Lingfeng Ye, Chuyu Timko, Michael P. Fan, Longjiang Ju, Haixing |
author_facet | Jiang, Weiqin Zhang, Xingchen Chu, Qinjie Lu, Sen Zhou, Linfu Lu, Xingang Liu, Chen Mao, Lingfeng Ye, Chuyu Timko, Michael P. Fan, Longjiang Ju, Haixing |
author_sort | Jiang, Weiqin |
collection | PubMed |
description | Circular RNAs (circRNAs) have been reported that can be used as biomarkers for colorectal cancers (CRC) and other types of tumors. However, a limited number of studies have been performed investigating the potential role of circRNAs in tumor metastasis. Here, we examined the circRNAs in two CRC cell lines (a primary tumor cell SW480 and its metastasis cell SW620), and found a large set of circRNA (2,919 ncDECs) with significantly differential expression patterns relative to normal cells (NCM460). In addition, we uncovered a set of 623 pmDECs that differ between the primary CRC cells and its metastasis cells. Both differentially expressed circRNA (DEC) sets contain many previously unknown putative CRC-related circRNAs, thereby providing many new circRNAs as candidate biomarkers for CRC development and metastasis. These studies are the first large-scale identification of metastasis-related circRNAs for CRC and provide valuable candidate biomarkers for diagnostic and a starting point for additional investigations of CRC metastasis. |
format | Online Article Text |
id | pubmed-5811837 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-58118372018-02-23 The Circular RNA Profiles of Colorectal Tumor Metastatic Cells Jiang, Weiqin Zhang, Xingchen Chu, Qinjie Lu, Sen Zhou, Linfu Lu, Xingang Liu, Chen Mao, Lingfeng Ye, Chuyu Timko, Michael P. Fan, Longjiang Ju, Haixing Front Genet Genetics Circular RNAs (circRNAs) have been reported that can be used as biomarkers for colorectal cancers (CRC) and other types of tumors. However, a limited number of studies have been performed investigating the potential role of circRNAs in tumor metastasis. Here, we examined the circRNAs in two CRC cell lines (a primary tumor cell SW480 and its metastasis cell SW620), and found a large set of circRNA (2,919 ncDECs) with significantly differential expression patterns relative to normal cells (NCM460). In addition, we uncovered a set of 623 pmDECs that differ between the primary CRC cells and its metastasis cells. Both differentially expressed circRNA (DEC) sets contain many previously unknown putative CRC-related circRNAs, thereby providing many new circRNAs as candidate biomarkers for CRC development and metastasis. These studies are the first large-scale identification of metastasis-related circRNAs for CRC and provide valuable candidate biomarkers for diagnostic and a starting point for additional investigations of CRC metastasis. Frontiers Media S.A. 2018-02-09 /pmc/articles/PMC5811837/ /pubmed/29479369 http://dx.doi.org/10.3389/fgene.2018.00034 Text en Copyright © 2018 Jiang, Zhang, Chu, Lu, Zhou, Lu, Liu, Mao, Ye, Timko, Fan and Ju. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Jiang, Weiqin Zhang, Xingchen Chu, Qinjie Lu, Sen Zhou, Linfu Lu, Xingang Liu, Chen Mao, Lingfeng Ye, Chuyu Timko, Michael P. Fan, Longjiang Ju, Haixing The Circular RNA Profiles of Colorectal Tumor Metastatic Cells |
title | The Circular RNA Profiles of Colorectal Tumor Metastatic Cells |
title_full | The Circular RNA Profiles of Colorectal Tumor Metastatic Cells |
title_fullStr | The Circular RNA Profiles of Colorectal Tumor Metastatic Cells |
title_full_unstemmed | The Circular RNA Profiles of Colorectal Tumor Metastatic Cells |
title_short | The Circular RNA Profiles of Colorectal Tumor Metastatic Cells |
title_sort | circular rna profiles of colorectal tumor metastatic cells |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5811837/ https://www.ncbi.nlm.nih.gov/pubmed/29479369 http://dx.doi.org/10.3389/fgene.2018.00034 |
work_keys_str_mv | AT jiangweiqin thecircularrnaprofilesofcolorectaltumormetastaticcells AT zhangxingchen thecircularrnaprofilesofcolorectaltumormetastaticcells AT chuqinjie thecircularrnaprofilesofcolorectaltumormetastaticcells AT lusen thecircularrnaprofilesofcolorectaltumormetastaticcells AT zhoulinfu thecircularrnaprofilesofcolorectaltumormetastaticcells AT luxingang thecircularrnaprofilesofcolorectaltumormetastaticcells AT liuchen thecircularrnaprofilesofcolorectaltumormetastaticcells AT maolingfeng thecircularrnaprofilesofcolorectaltumormetastaticcells AT yechuyu thecircularrnaprofilesofcolorectaltumormetastaticcells AT timkomichaelp thecircularrnaprofilesofcolorectaltumormetastaticcells AT fanlongjiang thecircularrnaprofilesofcolorectaltumormetastaticcells AT juhaixing thecircularrnaprofilesofcolorectaltumormetastaticcells AT jiangweiqin circularrnaprofilesofcolorectaltumormetastaticcells AT zhangxingchen circularrnaprofilesofcolorectaltumormetastaticcells AT chuqinjie circularrnaprofilesofcolorectaltumormetastaticcells AT lusen circularrnaprofilesofcolorectaltumormetastaticcells AT zhoulinfu circularrnaprofilesofcolorectaltumormetastaticcells AT luxingang circularrnaprofilesofcolorectaltumormetastaticcells AT liuchen circularrnaprofilesofcolorectaltumormetastaticcells AT maolingfeng circularrnaprofilesofcolorectaltumormetastaticcells AT yechuyu circularrnaprofilesofcolorectaltumormetastaticcells AT timkomichaelp circularrnaprofilesofcolorectaltumormetastaticcells AT fanlongjiang circularrnaprofilesofcolorectaltumormetastaticcells AT juhaixing circularrnaprofilesofcolorectaltumormetastaticcells |