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The Circular RNA Profiles of Colorectal Tumor Metastatic Cells

Circular RNAs (circRNAs) have been reported that can be used as biomarkers for colorectal cancers (CRC) and other types of tumors. However, a limited number of studies have been performed investigating the potential role of circRNAs in tumor metastasis. Here, we examined the circRNAs in two CRC cell...

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Autores principales: Jiang, Weiqin, Zhang, Xingchen, Chu, Qinjie, Lu, Sen, Zhou, Linfu, Lu, Xingang, Liu, Chen, Mao, Lingfeng, Ye, Chuyu, Timko, Michael P., Fan, Longjiang, Ju, Haixing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5811837/
https://www.ncbi.nlm.nih.gov/pubmed/29479369
http://dx.doi.org/10.3389/fgene.2018.00034
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author Jiang, Weiqin
Zhang, Xingchen
Chu, Qinjie
Lu, Sen
Zhou, Linfu
Lu, Xingang
Liu, Chen
Mao, Lingfeng
Ye, Chuyu
Timko, Michael P.
Fan, Longjiang
Ju, Haixing
author_facet Jiang, Weiqin
Zhang, Xingchen
Chu, Qinjie
Lu, Sen
Zhou, Linfu
Lu, Xingang
Liu, Chen
Mao, Lingfeng
Ye, Chuyu
Timko, Michael P.
Fan, Longjiang
Ju, Haixing
author_sort Jiang, Weiqin
collection PubMed
description Circular RNAs (circRNAs) have been reported that can be used as biomarkers for colorectal cancers (CRC) and other types of tumors. However, a limited number of studies have been performed investigating the potential role of circRNAs in tumor metastasis. Here, we examined the circRNAs in two CRC cell lines (a primary tumor cell SW480 and its metastasis cell SW620), and found a large set of circRNA (2,919 ncDECs) with significantly differential expression patterns relative to normal cells (NCM460). In addition, we uncovered a set of 623 pmDECs that differ between the primary CRC cells and its metastasis cells. Both differentially expressed circRNA (DEC) sets contain many previously unknown putative CRC-related circRNAs, thereby providing many new circRNAs as candidate biomarkers for CRC development and metastasis. These studies are the first large-scale identification of metastasis-related circRNAs for CRC and provide valuable candidate biomarkers for diagnostic and a starting point for additional investigations of CRC metastasis.
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spelling pubmed-58118372018-02-23 The Circular RNA Profiles of Colorectal Tumor Metastatic Cells Jiang, Weiqin Zhang, Xingchen Chu, Qinjie Lu, Sen Zhou, Linfu Lu, Xingang Liu, Chen Mao, Lingfeng Ye, Chuyu Timko, Michael P. Fan, Longjiang Ju, Haixing Front Genet Genetics Circular RNAs (circRNAs) have been reported that can be used as biomarkers for colorectal cancers (CRC) and other types of tumors. However, a limited number of studies have been performed investigating the potential role of circRNAs in tumor metastasis. Here, we examined the circRNAs in two CRC cell lines (a primary tumor cell SW480 and its metastasis cell SW620), and found a large set of circRNA (2,919 ncDECs) with significantly differential expression patterns relative to normal cells (NCM460). In addition, we uncovered a set of 623 pmDECs that differ between the primary CRC cells and its metastasis cells. Both differentially expressed circRNA (DEC) sets contain many previously unknown putative CRC-related circRNAs, thereby providing many new circRNAs as candidate biomarkers for CRC development and metastasis. These studies are the first large-scale identification of metastasis-related circRNAs for CRC and provide valuable candidate biomarkers for diagnostic and a starting point for additional investigations of CRC metastasis. Frontiers Media S.A. 2018-02-09 /pmc/articles/PMC5811837/ /pubmed/29479369 http://dx.doi.org/10.3389/fgene.2018.00034 Text en Copyright © 2018 Jiang, Zhang, Chu, Lu, Zhou, Lu, Liu, Mao, Ye, Timko, Fan and Ju. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Jiang, Weiqin
Zhang, Xingchen
Chu, Qinjie
Lu, Sen
Zhou, Linfu
Lu, Xingang
Liu, Chen
Mao, Lingfeng
Ye, Chuyu
Timko, Michael P.
Fan, Longjiang
Ju, Haixing
The Circular RNA Profiles of Colorectal Tumor Metastatic Cells
title The Circular RNA Profiles of Colorectal Tumor Metastatic Cells
title_full The Circular RNA Profiles of Colorectal Tumor Metastatic Cells
title_fullStr The Circular RNA Profiles of Colorectal Tumor Metastatic Cells
title_full_unstemmed The Circular RNA Profiles of Colorectal Tumor Metastatic Cells
title_short The Circular RNA Profiles of Colorectal Tumor Metastatic Cells
title_sort circular rna profiles of colorectal tumor metastatic cells
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5811837/
https://www.ncbi.nlm.nih.gov/pubmed/29479369
http://dx.doi.org/10.3389/fgene.2018.00034
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