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Real-time fluorescence loop-mediated isothermal amplification assay for direct detection of egg drop syndrome virus

BACKGROUND: Egg drop syndrome (EDS), caused by the adenovirus “egg drop syndrome virus” (EDSV) causes severe economic losses through reduced egg production in breeder and layer flocks. The diagnosis of EDSV has been done by molecular tools since its complete genome sequence was identified. In order...

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Autores principales: Zheney, Makay, Kaziyev, Zhambul, Kassenova, Gulmira, Zhao, Lingna, Liu, Wei, Liang, Lin, Li, Gang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5811957/
https://www.ncbi.nlm.nih.gov/pubmed/29439721
http://dx.doi.org/10.1186/s12917-018-1364-9
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author Zheney, Makay
Kaziyev, Zhambul
Kassenova, Gulmira
Zhao, Lingna
Liu, Wei
Liang, Lin
Li, Gang
author_facet Zheney, Makay
Kaziyev, Zhambul
Kassenova, Gulmira
Zhao, Lingna
Liu, Wei
Liang, Lin
Li, Gang
author_sort Zheney, Makay
collection PubMed
description BACKGROUND: Egg drop syndrome (EDS), caused by the adenovirus “egg drop syndrome virus” (EDSV) causes severe economic losses through reduced egg production in breeder and layer flocks. The diagnosis of EDSV has been done by molecular tools since its complete genome sequence was identified. In order to enhance the capabilities of the real-time fluorescence loop-mediated isothermal amplification (RealAmp) assay, we aimed to apply the method for direct detection of the EDSV without viral DNA extraction. In order to detect the presence of the EDSV DNA, three pairs of primers were designed, from the conserved region of fiber gene of the EDSV. RESULTS: For our assay, test and control samples were directly used in the reaction mixture in 10-fold serial dilution. The target DNA was amplified at 65 °C, which yield positive results in a relatively short period of 40–45 min. The method reported in this study is highly sensitive as compared to polymerase chain reaction (PCR) and showed no sign of cross-reactivity or false positive results. The RealAmp accomplished specific identification of EDSV among a variety of poultry disease viruses. CONCLUSIONS: The direct RealAmp can be used to detect the presence of EDSV. As our result showed, the RealAmp method could be suitable for the direct detection of other DNA viruses.
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spelling pubmed-58119572018-02-15 Real-time fluorescence loop-mediated isothermal amplification assay for direct detection of egg drop syndrome virus Zheney, Makay Kaziyev, Zhambul Kassenova, Gulmira Zhao, Lingna Liu, Wei Liang, Lin Li, Gang BMC Vet Res Methodology Article BACKGROUND: Egg drop syndrome (EDS), caused by the adenovirus “egg drop syndrome virus” (EDSV) causes severe economic losses through reduced egg production in breeder and layer flocks. The diagnosis of EDSV has been done by molecular tools since its complete genome sequence was identified. In order to enhance the capabilities of the real-time fluorescence loop-mediated isothermal amplification (RealAmp) assay, we aimed to apply the method for direct detection of the EDSV without viral DNA extraction. In order to detect the presence of the EDSV DNA, three pairs of primers were designed, from the conserved region of fiber gene of the EDSV. RESULTS: For our assay, test and control samples were directly used in the reaction mixture in 10-fold serial dilution. The target DNA was amplified at 65 °C, which yield positive results in a relatively short period of 40–45 min. The method reported in this study is highly sensitive as compared to polymerase chain reaction (PCR) and showed no sign of cross-reactivity or false positive results. The RealAmp accomplished specific identification of EDSV among a variety of poultry disease viruses. CONCLUSIONS: The direct RealAmp can be used to detect the presence of EDSV. As our result showed, the RealAmp method could be suitable for the direct detection of other DNA viruses. BioMed Central 2018-02-13 /pmc/articles/PMC5811957/ /pubmed/29439721 http://dx.doi.org/10.1186/s12917-018-1364-9 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology Article
Zheney, Makay
Kaziyev, Zhambul
Kassenova, Gulmira
Zhao, Lingna
Liu, Wei
Liang, Lin
Li, Gang
Real-time fluorescence loop-mediated isothermal amplification assay for direct detection of egg drop syndrome virus
title Real-time fluorescence loop-mediated isothermal amplification assay for direct detection of egg drop syndrome virus
title_full Real-time fluorescence loop-mediated isothermal amplification assay for direct detection of egg drop syndrome virus
title_fullStr Real-time fluorescence loop-mediated isothermal amplification assay for direct detection of egg drop syndrome virus
title_full_unstemmed Real-time fluorescence loop-mediated isothermal amplification assay for direct detection of egg drop syndrome virus
title_short Real-time fluorescence loop-mediated isothermal amplification assay for direct detection of egg drop syndrome virus
title_sort real-time fluorescence loop-mediated isothermal amplification assay for direct detection of egg drop syndrome virus
topic Methodology Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5811957/
https://www.ncbi.nlm.nih.gov/pubmed/29439721
http://dx.doi.org/10.1186/s12917-018-1364-9
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