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Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment

The genetic basis of earlobe attachment has been a matter of debate since the early 20(th) century, such that geneticists argue both for and against polygenic inheritance. Recent genetic studies have identified a few loci associated with the trait, but large-scale analyses are still lacking. Here, w...

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Autores principales: Shaffer, John R., Li, Jinxi, Lee, Myoung Keun, Roosenboom, Jasmien, Orlova, Ekaterina, Adhikari, Kaustabh, Gallo, Carla, Poletti, Giovanni, Schuler-Faccini, Lavinia, Bortolini, Maria-Cátira, Canizales-Quinteros, Samuel, Rothhammer, Francisco, Bedoya, Gabriel, González-José, Rolando, Pfeffer, Paige E., Wollenschlaeger, Christopher A., Hecht, Jacqueline T., Wehby, George L., Moreno, Lina M., Ding, Anan, Jin, Li, Yang, Yajun, Carlson, Jenna C., Leslie, Elizabeth J., Feingold, Eleanor, Marazita, Mary L., Hinds, David A., Cox, Timothy C., Wang, Sijia, Ruiz-Linares, Andrés, Weinberg, Seth M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5812923/
https://www.ncbi.nlm.nih.gov/pubmed/29198719
http://dx.doi.org/10.1016/j.ajhg.2017.10.001
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author Shaffer, John R.
Li, Jinxi
Lee, Myoung Keun
Roosenboom, Jasmien
Orlova, Ekaterina
Adhikari, Kaustabh
Gallo, Carla
Poletti, Giovanni
Schuler-Faccini, Lavinia
Bortolini, Maria-Cátira
Canizales-Quinteros, Samuel
Rothhammer, Francisco
Bedoya, Gabriel
González-José, Rolando
Pfeffer, Paige E.
Wollenschlaeger, Christopher A.
Hecht, Jacqueline T.
Wehby, George L.
Moreno, Lina M.
Ding, Anan
Jin, Li
Yang, Yajun
Carlson, Jenna C.
Leslie, Elizabeth J.
Feingold, Eleanor
Marazita, Mary L.
Hinds, David A.
Cox, Timothy C.
Wang, Sijia
Ruiz-Linares, Andrés
Weinberg, Seth M.
author_facet Shaffer, John R.
Li, Jinxi
Lee, Myoung Keun
Roosenboom, Jasmien
Orlova, Ekaterina
Adhikari, Kaustabh
Gallo, Carla
Poletti, Giovanni
Schuler-Faccini, Lavinia
Bortolini, Maria-Cátira
Canizales-Quinteros, Samuel
Rothhammer, Francisco
Bedoya, Gabriel
González-José, Rolando
Pfeffer, Paige E.
Wollenschlaeger, Christopher A.
Hecht, Jacqueline T.
Wehby, George L.
Moreno, Lina M.
Ding, Anan
Jin, Li
Yang, Yajun
Carlson, Jenna C.
Leslie, Elizabeth J.
Feingold, Eleanor
Marazita, Mary L.
Hinds, David A.
Cox, Timothy C.
Wang, Sijia
Ruiz-Linares, Andrés
Weinberg, Seth M.
author_sort Shaffer, John R.
collection PubMed
description The genetic basis of earlobe attachment has been a matter of debate since the early 20(th) century, such that geneticists argue both for and against polygenic inheritance. Recent genetic studies have identified a few loci associated with the trait, but large-scale analyses are still lacking. Here, we performed a genome-wide association study of lobe attachment in a multiethnic sample of 74,660 individuals from four cohorts (three with the trait scored by an expert rater and one with the trait self-reported). Meta-analysis of the three expert-rater-scored cohorts revealed six associated loci harboring numerous candidate genes, including EDAR, SP5, MRPS22, ADGRG6 (GPR126), KIAA1217, and PAX9. The large self-reported 23andMe cohort recapitulated each of these six loci. Moreover, meta-analysis across all four cohorts revealed a total of 49 significant (p < 5 × 10(−8)) loci. Annotation and enrichment analyses of these 49 loci showed strong evidence of genes involved in ear development and syndromes with auricular phenotypes. RNA sequencing data from both human fetal ear and mouse second branchial arch tissue confirmed that genes located among associated loci showed evidence of expression. These results provide strong evidence for the polygenic nature of earlobe attachment and offer insights into the biological basis of normal and abnormal ear development.
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spelling pubmed-58129232018-02-20 Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment Shaffer, John R. Li, Jinxi Lee, Myoung Keun Roosenboom, Jasmien Orlova, Ekaterina Adhikari, Kaustabh Gallo, Carla Poletti, Giovanni Schuler-Faccini, Lavinia Bortolini, Maria-Cátira Canizales-Quinteros, Samuel Rothhammer, Francisco Bedoya, Gabriel González-José, Rolando Pfeffer, Paige E. Wollenschlaeger, Christopher A. Hecht, Jacqueline T. Wehby, George L. Moreno, Lina M. Ding, Anan Jin, Li Yang, Yajun Carlson, Jenna C. Leslie, Elizabeth J. Feingold, Eleanor Marazita, Mary L. Hinds, David A. Cox, Timothy C. Wang, Sijia Ruiz-Linares, Andrés Weinberg, Seth M. Am J Hum Genet Article The genetic basis of earlobe attachment has been a matter of debate since the early 20(th) century, such that geneticists argue both for and against polygenic inheritance. Recent genetic studies have identified a few loci associated with the trait, but large-scale analyses are still lacking. Here, we performed a genome-wide association study of lobe attachment in a multiethnic sample of 74,660 individuals from four cohorts (three with the trait scored by an expert rater and one with the trait self-reported). Meta-analysis of the three expert-rater-scored cohorts revealed six associated loci harboring numerous candidate genes, including EDAR, SP5, MRPS22, ADGRG6 (GPR126), KIAA1217, and PAX9. The large self-reported 23andMe cohort recapitulated each of these six loci. Moreover, meta-analysis across all four cohorts revealed a total of 49 significant (p < 5 × 10(−8)) loci. Annotation and enrichment analyses of these 49 loci showed strong evidence of genes involved in ear development and syndromes with auricular phenotypes. RNA sequencing data from both human fetal ear and mouse second branchial arch tissue confirmed that genes located among associated loci showed evidence of expression. These results provide strong evidence for the polygenic nature of earlobe attachment and offer insights into the biological basis of normal and abnormal ear development. Elsevier 2017-12-07 2017-11-30 /pmc/articles/PMC5812923/ /pubmed/29198719 http://dx.doi.org/10.1016/j.ajhg.2017.10.001 Text en © 2017 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Shaffer, John R.
Li, Jinxi
Lee, Myoung Keun
Roosenboom, Jasmien
Orlova, Ekaterina
Adhikari, Kaustabh
Gallo, Carla
Poletti, Giovanni
Schuler-Faccini, Lavinia
Bortolini, Maria-Cátira
Canizales-Quinteros, Samuel
Rothhammer, Francisco
Bedoya, Gabriel
González-José, Rolando
Pfeffer, Paige E.
Wollenschlaeger, Christopher A.
Hecht, Jacqueline T.
Wehby, George L.
Moreno, Lina M.
Ding, Anan
Jin, Li
Yang, Yajun
Carlson, Jenna C.
Leslie, Elizabeth J.
Feingold, Eleanor
Marazita, Mary L.
Hinds, David A.
Cox, Timothy C.
Wang, Sijia
Ruiz-Linares, Andrés
Weinberg, Seth M.
Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment
title Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment
title_full Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment
title_fullStr Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment
title_full_unstemmed Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment
title_short Multiethnic GWAS Reveals Polygenic Architecture of Earlobe Attachment
title_sort multiethnic gwas reveals polygenic architecture of earlobe attachment
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5812923/
https://www.ncbi.nlm.nih.gov/pubmed/29198719
http://dx.doi.org/10.1016/j.ajhg.2017.10.001
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