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Quantitative radiomic profiling of glioblastoma represents transcriptomic expression
Quantitative imaging biomarkers have increasingly emerged in the field of research utilizing available imaging modalities. We aimed to identify good surrogate radiomic features that can represent genetic changes of tumors, thereby establishing noninvasive means for predicting treatment outcome. From...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5814216/ https://www.ncbi.nlm.nih.gov/pubmed/29464076 http://dx.doi.org/10.18632/oncotarget.23975 |
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author | Kong, Doo-Sik Kim, Junhyung Ryu, Gyuha You, Hye-Jin Sung, Joon Kyung Han, Yong Hee Shin, Hye-Mi Lee, In-Hee Kim, Sung-Tae Park, Chul-Kee Choi, Seung Hong Choi, Jeong Won Seol, Ho Jun Lee, Jung-Il Nam, Do-Hyun |
author_facet | Kong, Doo-Sik Kim, Junhyung Ryu, Gyuha You, Hye-Jin Sung, Joon Kyung Han, Yong Hee Shin, Hye-Mi Lee, In-Hee Kim, Sung-Tae Park, Chul-Kee Choi, Seung Hong Choi, Jeong Won Seol, Ho Jun Lee, Jung-Il Nam, Do-Hyun |
author_sort | Kong, Doo-Sik |
collection | PubMed |
description | Quantitative imaging biomarkers have increasingly emerged in the field of research utilizing available imaging modalities. We aimed to identify good surrogate radiomic features that can represent genetic changes of tumors, thereby establishing noninvasive means for predicting treatment outcome. From May 2012 to June 2014, we retrospectively identified 65 patients with treatment-naïve glioblastoma with available clinical information from the Samsung Medical Center data registry. Preoperative MR imaging data were obtained for all 65 patients with primary glioblastoma. A total of 82 imaging features including first-order statistics, volume, and size features, were semi-automatically extracted from structural and physiologic images such as apparent diffusion coefficient and perfusion images. Using commercially available software, NordicICE, we performed quantitative imaging analysis and collected the dataset composed of radiophenotypic parameters. Unsupervised clustering methods revealed that the radiophenotypic dataset was composed of three clusters. Each cluster represented a distinct molecular classification of glioblastoma; classical type, proneural and neural types, and mesenchymal type. These clusters also reflected differential clinical outcomes. We found that extracted imaging signatures does not represent copy number variation and somatic mutation. Quantitative radiomic features provide a potential evidence to predict molecular phenotype and treatment outcome. Radiomic profiles represents transcriptomic phenotypes more well. |
format | Online Article Text |
id | pubmed-5814216 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-58142162018-02-20 Quantitative radiomic profiling of glioblastoma represents transcriptomic expression Kong, Doo-Sik Kim, Junhyung Ryu, Gyuha You, Hye-Jin Sung, Joon Kyung Han, Yong Hee Shin, Hye-Mi Lee, In-Hee Kim, Sung-Tae Park, Chul-Kee Choi, Seung Hong Choi, Jeong Won Seol, Ho Jun Lee, Jung-Il Nam, Do-Hyun Oncotarget Research Paper Quantitative imaging biomarkers have increasingly emerged in the field of research utilizing available imaging modalities. We aimed to identify good surrogate radiomic features that can represent genetic changes of tumors, thereby establishing noninvasive means for predicting treatment outcome. From May 2012 to June 2014, we retrospectively identified 65 patients with treatment-naïve glioblastoma with available clinical information from the Samsung Medical Center data registry. Preoperative MR imaging data were obtained for all 65 patients with primary glioblastoma. A total of 82 imaging features including first-order statistics, volume, and size features, were semi-automatically extracted from structural and physiologic images such as apparent diffusion coefficient and perfusion images. Using commercially available software, NordicICE, we performed quantitative imaging analysis and collected the dataset composed of radiophenotypic parameters. Unsupervised clustering methods revealed that the radiophenotypic dataset was composed of three clusters. Each cluster represented a distinct molecular classification of glioblastoma; classical type, proneural and neural types, and mesenchymal type. These clusters also reflected differential clinical outcomes. We found that extracted imaging signatures does not represent copy number variation and somatic mutation. Quantitative radiomic features provide a potential evidence to predict molecular phenotype and treatment outcome. Radiomic profiles represents transcriptomic phenotypes more well. Impact Journals LLC 2018-01-05 /pmc/articles/PMC5814216/ /pubmed/29464076 http://dx.doi.org/10.18632/oncotarget.23975 Text en Copyright: © 2018 Kong et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) 3.0 (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Kong, Doo-Sik Kim, Junhyung Ryu, Gyuha You, Hye-Jin Sung, Joon Kyung Han, Yong Hee Shin, Hye-Mi Lee, In-Hee Kim, Sung-Tae Park, Chul-Kee Choi, Seung Hong Choi, Jeong Won Seol, Ho Jun Lee, Jung-Il Nam, Do-Hyun Quantitative radiomic profiling of glioblastoma represents transcriptomic expression |
title | Quantitative radiomic profiling of glioblastoma represents transcriptomic expression |
title_full | Quantitative radiomic profiling of glioblastoma represents transcriptomic expression |
title_fullStr | Quantitative radiomic profiling of glioblastoma represents transcriptomic expression |
title_full_unstemmed | Quantitative radiomic profiling of glioblastoma represents transcriptomic expression |
title_short | Quantitative radiomic profiling of glioblastoma represents transcriptomic expression |
title_sort | quantitative radiomic profiling of glioblastoma represents transcriptomic expression |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5814216/ https://www.ncbi.nlm.nih.gov/pubmed/29464076 http://dx.doi.org/10.18632/oncotarget.23975 |
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