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Effects of interactions between common genetic variants and alcohol consumption on colorectal cancer risk
BACKGROUND: Genome-wide association studies (GWAS) have identified approximately 40 common genetic loci associated with colorectal cancer risk. To investigate possible gene-environment interactions (GEIs) between GWAS-identified single-nucleotide polymorphisms (SNPs) and alcohol consumption with res...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5814220/ https://www.ncbi.nlm.nih.gov/pubmed/29464080 http://dx.doi.org/10.18632/oncotarget.23997 |
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author | Song, Nan Shin, Aesun Oh, Jae Hwan Kim, Jeongseon |
author_facet | Song, Nan Shin, Aesun Oh, Jae Hwan Kim, Jeongseon |
author_sort | Song, Nan |
collection | PubMed |
description | BACKGROUND: Genome-wide association studies (GWAS) have identified approximately 40 common genetic loci associated with colorectal cancer risk. To investigate possible gene-environment interactions (GEIs) between GWAS-identified single-nucleotide polymorphisms (SNPs) and alcohol consumption with respect to colorectal cancer, a hospital-based case-control study was conducted. RESULTS: Higher levels of alcohol consumption as calculated based on a standardized definition of a drink (1 drink=12.5g of ethanol) were associated with increased risk of colorectal cancer (OR=2.47, 95% CI=1.62-3.76 for heavy drinkers [>50g/day] compared to never drinkers; p(trend)<0.01). SNP rs6687758 near the DUSP10 gene at 1q41 had a statistically significant interaction with alcohol consumption in analyses of standardized drinks (p=4.6×10(-3)), although this did not surpass the corrected threshold for multiple testing. When stratified by alcohol consumption levels, in an additive model the risk of colorectal cancer associated with the G allele of rs6687758 tended to increase among individuals in the heavier alcohol consumption strata. A statistically significant association between rs6687758 and colorectal cancer risk was observed among moderate alcohol drinkers who consumed between >12.5 and ≤50g of alcohol per day (OR=1.46, 95% CI=1.01-2.11). METHODS: A total of 2,109 subjects (703 colorectal cancer patients and 1,406 healthy controls) were recruited from the Korean National Cancer Center. For genotyping, 30 GWAS-identified SNPs were selected. A logistic regression model was used to evaluate associations of SNPs and alcohol consumption with colorectal cancer risk. We also tested GEIs between SNPs and alcohol consumption using a logistic model with multiplicative interaction terms. CONCLUSIONS: Our results suggest that SNP rs6687758 at 1q41 may interact with alcohol consumption in the etiology of colorectal cancer. |
format | Online Article Text |
id | pubmed-5814220 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-58142202018-02-20 Effects of interactions between common genetic variants and alcohol consumption on colorectal cancer risk Song, Nan Shin, Aesun Oh, Jae Hwan Kim, Jeongseon Oncotarget Research Paper BACKGROUND: Genome-wide association studies (GWAS) have identified approximately 40 common genetic loci associated with colorectal cancer risk. To investigate possible gene-environment interactions (GEIs) between GWAS-identified single-nucleotide polymorphisms (SNPs) and alcohol consumption with respect to colorectal cancer, a hospital-based case-control study was conducted. RESULTS: Higher levels of alcohol consumption as calculated based on a standardized definition of a drink (1 drink=12.5g of ethanol) were associated with increased risk of colorectal cancer (OR=2.47, 95% CI=1.62-3.76 for heavy drinkers [>50g/day] compared to never drinkers; p(trend)<0.01). SNP rs6687758 near the DUSP10 gene at 1q41 had a statistically significant interaction with alcohol consumption in analyses of standardized drinks (p=4.6×10(-3)), although this did not surpass the corrected threshold for multiple testing. When stratified by alcohol consumption levels, in an additive model the risk of colorectal cancer associated with the G allele of rs6687758 tended to increase among individuals in the heavier alcohol consumption strata. A statistically significant association between rs6687758 and colorectal cancer risk was observed among moderate alcohol drinkers who consumed between >12.5 and ≤50g of alcohol per day (OR=1.46, 95% CI=1.01-2.11). METHODS: A total of 2,109 subjects (703 colorectal cancer patients and 1,406 healthy controls) were recruited from the Korean National Cancer Center. For genotyping, 30 GWAS-identified SNPs were selected. A logistic regression model was used to evaluate associations of SNPs and alcohol consumption with colorectal cancer risk. We also tested GEIs between SNPs and alcohol consumption using a logistic model with multiplicative interaction terms. CONCLUSIONS: Our results suggest that SNP rs6687758 at 1q41 may interact with alcohol consumption in the etiology of colorectal cancer. Impact Journals LLC 2018-01-06 /pmc/articles/PMC5814220/ /pubmed/29464080 http://dx.doi.org/10.18632/oncotarget.23997 Text en Copyright: © 2018 Song et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/3.0/) 3.0 (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Song, Nan Shin, Aesun Oh, Jae Hwan Kim, Jeongseon Effects of interactions between common genetic variants and alcohol consumption on colorectal cancer risk |
title | Effects of interactions between common genetic variants and alcohol consumption on colorectal cancer risk |
title_full | Effects of interactions between common genetic variants and alcohol consumption on colorectal cancer risk |
title_fullStr | Effects of interactions between common genetic variants and alcohol consumption on colorectal cancer risk |
title_full_unstemmed | Effects of interactions between common genetic variants and alcohol consumption on colorectal cancer risk |
title_short | Effects of interactions between common genetic variants and alcohol consumption on colorectal cancer risk |
title_sort | effects of interactions between common genetic variants and alcohol consumption on colorectal cancer risk |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5814220/ https://www.ncbi.nlm.nih.gov/pubmed/29464080 http://dx.doi.org/10.18632/oncotarget.23997 |
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