Analysis of the Complete Genome Sequence of Cucumber mosaic virus Strain K

The complete genome sequence of Cucumber mosaic virus strain K was determined by deep RNA sequencing. The tripartite genome consists of a 3,382-nucleotide (nt) RNA1, a 3,050-nt RNA2, and a 2,218-nt RNA3 segment. Phylogenetic analysis placed RNA1 and RNA2 in subgroup IB. However, RNA3 grouped with su...

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Detalles Bibliográficos
Autores principales: Moyle, Richard, Pretorius, Lara-Simone, Shuey, Louise S., Nowak, Ekaterina, Schenk, Peer M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2018
Materias:
Viruses
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5814493/
https://www.ncbi.nlm.nih.gov/pubmed/29449390
http://dx.doi.org/10.1128/genomeA.00053-18
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author Moyle, Richard
Pretorius, Lara-Simone
Shuey, Louise S.
Nowak, Ekaterina
Schenk, Peer M.
author_facet Moyle, Richard
Pretorius, Lara-Simone
Shuey, Louise S.
Nowak, Ekaterina
Schenk, Peer M.
author_sort Moyle, Richard
collection PubMed
description The complete genome sequence of Cucumber mosaic virus strain K was determined by deep RNA sequencing. The tripartite genome consists of a 3,382-nucleotide (nt) RNA1, a 3,050-nt RNA2, and a 2,218-nt RNA3 segment. Phylogenetic analysis placed RNA1 and RNA2 in subgroup IB. However, RNA3 grouped with subgroup IA isolates, indicating a likely recombination event.
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spelling pubmed-58144932018-03-05 Analysis of the Complete Genome Sequence of Cucumber mosaic virus Strain K Moyle, Richard Pretorius, Lara-Simone Shuey, Louise S. Nowak, Ekaterina Schenk, Peer M. Genome Announc Viruses The complete genome sequence of Cucumber mosaic virus strain K was determined by deep RNA sequencing. The tripartite genome consists of a 3,382-nucleotide (nt) RNA1, a 3,050-nt RNA2, and a 2,218-nt RNA3 segment. Phylogenetic analysis placed RNA1 and RNA2 in subgroup IB. However, RNA3 grouped with subgroup IA isolates, indicating a likely recombination event. American Society for Microbiology 2018-02-15 /pmc/articles/PMC5814493/ /pubmed/29449390 http://dx.doi.org/10.1128/genomeA.00053-18 Text en Copyright © 2018 Moyle et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Viruses
Moyle, Richard
Pretorius, Lara-Simone
Shuey, Louise S.
Nowak, Ekaterina
Schenk, Peer M.
Analysis of the Complete Genome Sequence of Cucumber mosaic virus Strain K
title Analysis of the Complete Genome Sequence of Cucumber mosaic virus Strain K
title_full Analysis of the Complete Genome Sequence of Cucumber mosaic virus Strain K
title_fullStr Analysis of the Complete Genome Sequence of Cucumber mosaic virus Strain K
title_full_unstemmed Analysis of the Complete Genome Sequence of Cucumber mosaic virus Strain K
title_short Analysis of the Complete Genome Sequence of Cucumber mosaic virus Strain K
title_sort analysis of the complete genome sequence of cucumber mosaic virus strain k
topic Viruses
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5814493/
https://www.ncbi.nlm.nih.gov/pubmed/29449390
http://dx.doi.org/10.1128/genomeA.00053-18
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