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Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions

Knowledge of the full target space of bioactive substances, approved and investigational drugs as well as chemical probes, provides important insights into therapeutic potential and possible adverse effects. The existing compound-target bioactivity data resources are often incomparable due to non-st...

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Autores principales: Tang, Jing, Tanoli, Zia-ur-Rehman, Ravikumar, Balaguru, Alam, Zaid, Rebane, Anni, Vähä-Koskela, Markus, Peddinti, Gopal, van Adrichem, Arjan J., Wakkinen, Janica, Jaiswal, Alok, Karjalainen, Ella, Gautam, Prson, He, Liye, Parri, Elina, Khan, Suleiman, Gupta, Abhishekh, Ali, Mehreen, Yetukuri, Laxman, Gustavsson, Anna-Lena, Seashore-Ludlow, Brinton, Hersey, Anne, Leach, Andrew R., Overington, John P., Repasky, Gretchen, Wennerberg, Krister, Aittokallio, Tero
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cell Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5814751/
https://www.ncbi.nlm.nih.gov/pubmed/29276046
http://dx.doi.org/10.1016/j.chembiol.2017.11.009
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author Tang, Jing
Tanoli, Zia-ur-Rehman
Ravikumar, Balaguru
Alam, Zaid
Rebane, Anni
Vähä-Koskela, Markus
Peddinti, Gopal
van Adrichem, Arjan J.
Wakkinen, Janica
Jaiswal, Alok
Karjalainen, Ella
Gautam, Prson
He, Liye
Parri, Elina
Khan, Suleiman
Gupta, Abhishekh
Ali, Mehreen
Yetukuri, Laxman
Gustavsson, Anna-Lena
Seashore-Ludlow, Brinton
Hersey, Anne
Leach, Andrew R.
Overington, John P.
Repasky, Gretchen
Wennerberg, Krister
Aittokallio, Tero
author_facet Tang, Jing
Tanoli, Zia-ur-Rehman
Ravikumar, Balaguru
Alam, Zaid
Rebane, Anni
Vähä-Koskela, Markus
Peddinti, Gopal
van Adrichem, Arjan J.
Wakkinen, Janica
Jaiswal, Alok
Karjalainen, Ella
Gautam, Prson
He, Liye
Parri, Elina
Khan, Suleiman
Gupta, Abhishekh
Ali, Mehreen
Yetukuri, Laxman
Gustavsson, Anna-Lena
Seashore-Ludlow, Brinton
Hersey, Anne
Leach, Andrew R.
Overington, John P.
Repasky, Gretchen
Wennerberg, Krister
Aittokallio, Tero
author_sort Tang, Jing
collection PubMed
description Knowledge of the full target space of bioactive substances, approved and investigational drugs as well as chemical probes, provides important insights into therapeutic potential and possible adverse effects. The existing compound-target bioactivity data resources are often incomparable due to non-standardized and heterogeneous assay types and variability in endpoint measurements. To extract higher value from the existing and future compound target-profiling data, we implemented an open-data web platform, named Drug Target Commons (DTC), which features tools for crowd-sourced compound-target bioactivity data annotation, standardization, curation, and intra-resource integration. We demonstrate the unique value of DTC with several examples related to both drug discovery and drug repurposing applications and invite researchers to join this community effort to increase the reuse and extension of compound bioactivity data.
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spelling pubmed-58147512018-02-22 Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions Tang, Jing Tanoli, Zia-ur-Rehman Ravikumar, Balaguru Alam, Zaid Rebane, Anni Vähä-Koskela, Markus Peddinti, Gopal van Adrichem, Arjan J. Wakkinen, Janica Jaiswal, Alok Karjalainen, Ella Gautam, Prson He, Liye Parri, Elina Khan, Suleiman Gupta, Abhishekh Ali, Mehreen Yetukuri, Laxman Gustavsson, Anna-Lena Seashore-Ludlow, Brinton Hersey, Anne Leach, Andrew R. Overington, John P. Repasky, Gretchen Wennerberg, Krister Aittokallio, Tero Cell Chem Biol Article Knowledge of the full target space of bioactive substances, approved and investigational drugs as well as chemical probes, provides important insights into therapeutic potential and possible adverse effects. The existing compound-target bioactivity data resources are often incomparable due to non-standardized and heterogeneous assay types and variability in endpoint measurements. To extract higher value from the existing and future compound target-profiling data, we implemented an open-data web platform, named Drug Target Commons (DTC), which features tools for crowd-sourced compound-target bioactivity data annotation, standardization, curation, and intra-resource integration. We demonstrate the unique value of DTC with several examples related to both drug discovery and drug repurposing applications and invite researchers to join this community effort to increase the reuse and extension of compound bioactivity data. Cell Press 2018-02-15 /pmc/articles/PMC5814751/ /pubmed/29276046 http://dx.doi.org/10.1016/j.chembiol.2017.11.009 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Tang, Jing
Tanoli, Zia-ur-Rehman
Ravikumar, Balaguru
Alam, Zaid
Rebane, Anni
Vähä-Koskela, Markus
Peddinti, Gopal
van Adrichem, Arjan J.
Wakkinen, Janica
Jaiswal, Alok
Karjalainen, Ella
Gautam, Prson
He, Liye
Parri, Elina
Khan, Suleiman
Gupta, Abhishekh
Ali, Mehreen
Yetukuri, Laxman
Gustavsson, Anna-Lena
Seashore-Ludlow, Brinton
Hersey, Anne
Leach, Andrew R.
Overington, John P.
Repasky, Gretchen
Wennerberg, Krister
Aittokallio, Tero
Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions
title Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions
title_full Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions
title_fullStr Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions
title_full_unstemmed Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions
title_short Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions
title_sort drug target commons: a community effort to build a consensus knowledge base for drug-target interactions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5814751/
https://www.ncbi.nlm.nih.gov/pubmed/29276046
http://dx.doi.org/10.1016/j.chembiol.2017.11.009
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