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Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions
Knowledge of the full target space of bioactive substances, approved and investigational drugs as well as chemical probes, provides important insights into therapeutic potential and possible adverse effects. The existing compound-target bioactivity data resources are often incomparable due to non-st...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cell Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5814751/ https://www.ncbi.nlm.nih.gov/pubmed/29276046 http://dx.doi.org/10.1016/j.chembiol.2017.11.009 |
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author | Tang, Jing Tanoli, Zia-ur-Rehman Ravikumar, Balaguru Alam, Zaid Rebane, Anni Vähä-Koskela, Markus Peddinti, Gopal van Adrichem, Arjan J. Wakkinen, Janica Jaiswal, Alok Karjalainen, Ella Gautam, Prson He, Liye Parri, Elina Khan, Suleiman Gupta, Abhishekh Ali, Mehreen Yetukuri, Laxman Gustavsson, Anna-Lena Seashore-Ludlow, Brinton Hersey, Anne Leach, Andrew R. Overington, John P. Repasky, Gretchen Wennerberg, Krister Aittokallio, Tero |
author_facet | Tang, Jing Tanoli, Zia-ur-Rehman Ravikumar, Balaguru Alam, Zaid Rebane, Anni Vähä-Koskela, Markus Peddinti, Gopal van Adrichem, Arjan J. Wakkinen, Janica Jaiswal, Alok Karjalainen, Ella Gautam, Prson He, Liye Parri, Elina Khan, Suleiman Gupta, Abhishekh Ali, Mehreen Yetukuri, Laxman Gustavsson, Anna-Lena Seashore-Ludlow, Brinton Hersey, Anne Leach, Andrew R. Overington, John P. Repasky, Gretchen Wennerberg, Krister Aittokallio, Tero |
author_sort | Tang, Jing |
collection | PubMed |
description | Knowledge of the full target space of bioactive substances, approved and investigational drugs as well as chemical probes, provides important insights into therapeutic potential and possible adverse effects. The existing compound-target bioactivity data resources are often incomparable due to non-standardized and heterogeneous assay types and variability in endpoint measurements. To extract higher value from the existing and future compound target-profiling data, we implemented an open-data web platform, named Drug Target Commons (DTC), which features tools for crowd-sourced compound-target bioactivity data annotation, standardization, curation, and intra-resource integration. We demonstrate the unique value of DTC with several examples related to both drug discovery and drug repurposing applications and invite researchers to join this community effort to increase the reuse and extension of compound bioactivity data. |
format | Online Article Text |
id | pubmed-5814751 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Cell Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-58147512018-02-22 Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions Tang, Jing Tanoli, Zia-ur-Rehman Ravikumar, Balaguru Alam, Zaid Rebane, Anni Vähä-Koskela, Markus Peddinti, Gopal van Adrichem, Arjan J. Wakkinen, Janica Jaiswal, Alok Karjalainen, Ella Gautam, Prson He, Liye Parri, Elina Khan, Suleiman Gupta, Abhishekh Ali, Mehreen Yetukuri, Laxman Gustavsson, Anna-Lena Seashore-Ludlow, Brinton Hersey, Anne Leach, Andrew R. Overington, John P. Repasky, Gretchen Wennerberg, Krister Aittokallio, Tero Cell Chem Biol Article Knowledge of the full target space of bioactive substances, approved and investigational drugs as well as chemical probes, provides important insights into therapeutic potential and possible adverse effects. The existing compound-target bioactivity data resources are often incomparable due to non-standardized and heterogeneous assay types and variability in endpoint measurements. To extract higher value from the existing and future compound target-profiling data, we implemented an open-data web platform, named Drug Target Commons (DTC), which features tools for crowd-sourced compound-target bioactivity data annotation, standardization, curation, and intra-resource integration. We demonstrate the unique value of DTC with several examples related to both drug discovery and drug repurposing applications and invite researchers to join this community effort to increase the reuse and extension of compound bioactivity data. Cell Press 2018-02-15 /pmc/articles/PMC5814751/ /pubmed/29276046 http://dx.doi.org/10.1016/j.chembiol.2017.11.009 Text en © 2017 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Tang, Jing Tanoli, Zia-ur-Rehman Ravikumar, Balaguru Alam, Zaid Rebane, Anni Vähä-Koskela, Markus Peddinti, Gopal van Adrichem, Arjan J. Wakkinen, Janica Jaiswal, Alok Karjalainen, Ella Gautam, Prson He, Liye Parri, Elina Khan, Suleiman Gupta, Abhishekh Ali, Mehreen Yetukuri, Laxman Gustavsson, Anna-Lena Seashore-Ludlow, Brinton Hersey, Anne Leach, Andrew R. Overington, John P. Repasky, Gretchen Wennerberg, Krister Aittokallio, Tero Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions |
title | Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions |
title_full | Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions |
title_fullStr | Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions |
title_full_unstemmed | Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions |
title_short | Drug Target Commons: A Community Effort to Build a Consensus Knowledge Base for Drug-Target Interactions |
title_sort | drug target commons: a community effort to build a consensus knowledge base for drug-target interactions |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5814751/ https://www.ncbi.nlm.nih.gov/pubmed/29276046 http://dx.doi.org/10.1016/j.chembiol.2017.11.009 |
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