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A referenceless Nyquist ghost correction workflow for echo planar imaging of hyperpolarized [1‐(13)C]pyruvate and [1‐(13)C]lactate
Single‐shot echo planar imaging (EPI), which allows an image to be acquired using a single excitation pulse, is used widely for imaging the metabolism of hyperpolarized (13)C‐labelled metabolites in vivo as the technique is rapid and minimizes the depletion of the hyperpolarized signal. However, EPI...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5814908/ https://www.ncbi.nlm.nih.gov/pubmed/29215773 http://dx.doi.org/10.1002/nbm.3866 |
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author | Wang, Jiazheng Wright, Alan J. Hesketh, Richard L. Hu, De‐en Brindle, Kevin M. |
author_facet | Wang, Jiazheng Wright, Alan J. Hesketh, Richard L. Hu, De‐en Brindle, Kevin M. |
author_sort | Wang, Jiazheng |
collection | PubMed |
description | Single‐shot echo planar imaging (EPI), which allows an image to be acquired using a single excitation pulse, is used widely for imaging the metabolism of hyperpolarized (13)C‐labelled metabolites in vivo as the technique is rapid and minimizes the depletion of the hyperpolarized signal. However, EPI suffers from Nyquist ghosting, which normally is corrected for by acquiring a reference scan. In a dynamic acquisition of a series of images, this results in the sacrifice of a time point if the reference scan involves a full readout train with no phase encoding. This time penalty is negligible if an integrated navigator echo is used, but at the cost of a lower signal‐to‐noise ratio (SNR) as a result of prolonged T (2)* decay. We describe here a workflow for hyperpolarized (13)C EPI that requires no reference scan. This involves the selection of a ghost‐containing background from a (13)C image of a single metabolite at a single time point, the identification of phase correction coefficients that minimize signal in the selected area, and the application of these coefficients to images acquired at all time points and from all metabolites. The workflow was compared in phantom experiments with phase correction using a (13)C reference scan, and yielded similar results in situations with a regular field of view (FOV), a restricted FOV and where there were multiple signal sources. When compared with alternative phase correction methods, the workflow showed an SNR benefit relative to integrated (13)C reference echoes (>15%) or better ghost removal relative to a (1)H reference scan. The residual ghosting in a slightly de‐shimmed B (0) field was 1.6% using the proposed workflow and 3.8% using a (1)H reference scan. The workflow was implemented with a series of dynamically acquired hyperpolarized [1‐(13)C]pyruvate and [1‐(13)C]lactate images in vivo, resulting in images with no observable ghosting and which were quantitatively similar to images corrected using a (13)C reference scan. |
format | Online Article Text |
id | pubmed-5814908 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-58149082018-02-27 A referenceless Nyquist ghost correction workflow for echo planar imaging of hyperpolarized [1‐(13)C]pyruvate and [1‐(13)C]lactate Wang, Jiazheng Wright, Alan J. Hesketh, Richard L. Hu, De‐en Brindle, Kevin M. NMR Biomed Research Articles Single‐shot echo planar imaging (EPI), which allows an image to be acquired using a single excitation pulse, is used widely for imaging the metabolism of hyperpolarized (13)C‐labelled metabolites in vivo as the technique is rapid and minimizes the depletion of the hyperpolarized signal. However, EPI suffers from Nyquist ghosting, which normally is corrected for by acquiring a reference scan. In a dynamic acquisition of a series of images, this results in the sacrifice of a time point if the reference scan involves a full readout train with no phase encoding. This time penalty is negligible if an integrated navigator echo is used, but at the cost of a lower signal‐to‐noise ratio (SNR) as a result of prolonged T (2)* decay. We describe here a workflow for hyperpolarized (13)C EPI that requires no reference scan. This involves the selection of a ghost‐containing background from a (13)C image of a single metabolite at a single time point, the identification of phase correction coefficients that minimize signal in the selected area, and the application of these coefficients to images acquired at all time points and from all metabolites. The workflow was compared in phantom experiments with phase correction using a (13)C reference scan, and yielded similar results in situations with a regular field of view (FOV), a restricted FOV and where there were multiple signal sources. When compared with alternative phase correction methods, the workflow showed an SNR benefit relative to integrated (13)C reference echoes (>15%) or better ghost removal relative to a (1)H reference scan. The residual ghosting in a slightly de‐shimmed B (0) field was 1.6% using the proposed workflow and 3.8% using a (1)H reference scan. The workflow was implemented with a series of dynamically acquired hyperpolarized [1‐(13)C]pyruvate and [1‐(13)C]lactate images in vivo, resulting in images with no observable ghosting and which were quantitatively similar to images corrected using a (13)C reference scan. John Wiley and Sons Inc. 2017-12-07 2018-02 /pmc/articles/PMC5814908/ /pubmed/29215773 http://dx.doi.org/10.1002/nbm.3866 Text en © 2017 The Authors. NMR in Biomedicine published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Wang, Jiazheng Wright, Alan J. Hesketh, Richard L. Hu, De‐en Brindle, Kevin M. A referenceless Nyquist ghost correction workflow for echo planar imaging of hyperpolarized [1‐(13)C]pyruvate and [1‐(13)C]lactate |
title | A referenceless Nyquist ghost correction workflow for echo planar imaging of hyperpolarized [1‐(13)C]pyruvate and [1‐(13)C]lactate |
title_full | A referenceless Nyquist ghost correction workflow for echo planar imaging of hyperpolarized [1‐(13)C]pyruvate and [1‐(13)C]lactate |
title_fullStr | A referenceless Nyquist ghost correction workflow for echo planar imaging of hyperpolarized [1‐(13)C]pyruvate and [1‐(13)C]lactate |
title_full_unstemmed | A referenceless Nyquist ghost correction workflow for echo planar imaging of hyperpolarized [1‐(13)C]pyruvate and [1‐(13)C]lactate |
title_short | A referenceless Nyquist ghost correction workflow for echo planar imaging of hyperpolarized [1‐(13)C]pyruvate and [1‐(13)C]lactate |
title_sort | referenceless nyquist ghost correction workflow for echo planar imaging of hyperpolarized [1‐(13)c]pyruvate and [1‐(13)c]lactate |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5814908/ https://www.ncbi.nlm.nih.gov/pubmed/29215773 http://dx.doi.org/10.1002/nbm.3866 |
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