Cargando…

The effects of transcription and recombination on mutational dynamics of short tandem repeats

Short tandem repeats (STR) are ubiquitous components of the genomic architecture of most living organisms. Recent work has highlighted the widespread functional significance of such repeats, particularly around gene regulation, but the mutational processes underlying the evolution of these highly ab...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zavodna, Monika, Bagshaw, Andrew, Brauning, Rudiger, Gemmell, Neil J
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2018
Materias:	Molecular Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5814968/ https://www.ncbi.nlm.nih.gov/pubmed/29300948 http://dx.doi.org/10.1093/nar/gkx1253

Ejemplares similares

The Accuracy, Feasibility and Challenges of Sequencing Short Tandem Repeats Using Next-Generation Sequencing Platforms
por: Zavodna, Monika, et al.
Publicado: (2014)

Bisulfite probing reveals DNA structural intricacies
por: Bagshaw, Andrew T M, et al.
Publicado: (2023)

Short tandem repeat profiling for the authentication of cancer stem‐like cells
por: Visconti, Paola, et al.
Publicado: (2020)

Evolutionary Footprints of Short Tandem Repeats in Avian Promoters
por: Abe, Hideaki, et al.
Publicado: (2016)

Microsatellite Tandem Repeats Are Abundant in Human Promoters and Are Associated with Regulatory Elements
por: Sawaya, Sterling, et al.
Publicado: (2013)

The mutational dynamics of short tandem repeats in large, multigenerational families
por: Steely, Cody J., et al.
Publicado: (2022)

Epigenetics of a tandem DNA repeat: chromatin DNaseI sensitivity and opposite methylation changes in cancers
por: Tsumagari, Koji, et al.
Publicado: (2008)

SET3p monomethylates histone H3 on lysine 9 and is required for the silencing of tandemly repeated transgenes in Chlamydomonas
por: Casas-Mollano, J. Armando, et al.
Publicado: (2007)

Dataset on 21 autosomal and two sex determining short tandem repeat loci in the Kedayan population in Borneo, Malaysia
por: Hakim, Hashom Mohd, et al.
Publicado: (2020)

NanoSTR: A method for detection of target short tandem repeats based on nanopore sequencing data
por: Lang, Jidong, et al.
Publicado: (2023)

Transcription of telomeric DNA leads to high levels of homologous recombination and t-loops
por: Kar, Anirban, et al.
Publicado: (2016)

A Brief Review of Short Tandem Repeat Mutation
por: Fan, Hao, et al.
Publicado: (2007)

Population dataset for 21 simple tandem repeat loci in the Akan population of Ghana
por: Kofi, Abban Edward, et al.
Publicado: (2020)

Sequence-dependent dynamics of synthetic and endogenous RSSs in V(D)J recombination
por: Hirokawa, Soichi, et al.
Publicado: (2020)

Multilocus Variable-Number Tandem-Repeat Analysis of Yersinia ruckeri Confirms the Existence of Host Specificity, Geographic Endemism, and Anthropogenic Dissemination of Virulent Clones
por: Gulla, Snorre, et al.
Publicado: (2018)

Repeat or not repeat?—Statistical validation of tandem repeat prediction in genomic sequences
por: Schaper, Elke, et al.
Publicado: (2012)

Non-conservative homologous recombination in human B lymphocytes is promoted by activation-induced cytidine deaminase and transcription
por: Mierau, Maren, et al.
Publicado: (2008)

Identification of Protein Interacting Partners Using Tandem Affinity Purification
por: Bailey, Dalan, et al.
Publicado: (2012)

Properties of Mitotic and Meiotic Recombination in the Tandemly-Repeated CUP1 Gene Cluster in the Yeast Saccharomyces cerevisiae
por: Zhao, Ying, et al.
Publicado: (2017)

Inhibitory effect of a short Z-DNA forming sequence on transcription elongation by T7 RNA polymerase
por: Ditlevson, Jennifer V., et al.
Publicado: (2008)

Imprecise transcription termination within Escherichia coli greA leader gives rise to an array of short transcripts, GraL
por: Potrykus, Katarzyna, et al.
Publicado: (2010)

Reverse Transcription Errors and RNA–DNA Differences at Short Tandem Repeats
por: Fungtammasan, Arkarachai, et al.
Publicado: (2016)

High frequency of microsatellites in S. cerevisiae meiotic recombination hotspots
por: Bagshaw, Andrew TM, et al.
Publicado: (2008)

CTD kinase I is required for the integrity of the rDNA tandem array
por: Grenetier, Sabrina, et al.
Publicado: (2006)

Parallel Tagged Next-Generation Sequencing on Pooled Samples – A New Approach for Population Genetics in Ecology and Conservation
por: Zavodna, Monika, et al.
Publicado: (2013)

A persistent RNA·DNA hybrid formed by transcription of the Friedreich ataxia triplet repeat in live bacteria, and by T7 RNAP in vitro
por: Grabczyk, Ed, et al.
Publicado: (2007)

Short Tandem Repeats in Human Exons: A Target for Disease Mutations
por: Madsen, Bo Eskerod, et al.
Publicado: (2008)

Interpreting short tandem repeat variations in humans using mutational constraint
por: Gymrek, Melissa, et al.
Publicado: (2017)

Native functions of short tandem repeats
por: Wright, Shannon E, et al.
Publicado: (2023)

Association of poly-purine/poly-pyrimidine sequences with meiotic recombination hot spots
por: Bagshaw, Andrew TM, et al.
Publicado: (2006)

Distinct GDP/GTP bound states of the tandem G-domains of EngA regulate ribosome binding
por: Tomar, Sushil Kumar, et al.
Publicado: (2009)

Toward Male Individualization with Rapidly Mutating Y-Chromosomal Short Tandem Repeats
por: Ballantyne, Kaye N, et al.
Publicado: (2014)

The sequence of the repetitive motif influences the frequency of multistep mutations in Short Tandem Repeats
por: Antão-Sousa, Sofia, et al.
Publicado: (2023)

Coordination of -1 programmed ribosomal frameshifting by transcript and nascent chain features revealed by deep mutational scanning
por: Carmody, Patrick J, et al.
Publicado: (2021)

An updated definition of V(D)J recombination signal sequences revealed by high-throughput recombination assays
por: Hoolehan, Walker, et al.
Publicado: (2022)

Dynamic interactions of the HIV-1 Tat with nucleic acids are critical for Tat activity in reverse transcription
por: Boudier, Christian, et al.
Publicado: (2014)

CAG·CTG repeat instability in cultured human astrocytes
por: Farrell, Brian T., et al.
Publicado: (2006)

The mechanism of gene targeting in Physcomitrella patens: homologous recombination, concatenation and multiple integration
por: Kamisugi, Yasuko, et al.
Publicado: (2006)

Double-strand breaks in the myotonic dystrophy type 1 and the fragile X syndrome triplet repeat sequences induce different types of mutations in DNA flanking sequences in Escherichia coli
por: Kosmider, Beata, et al.
Publicado: (2006)

Cancer-causing mutations in the tumor suppressor PALB2 reveal a novel cancer mechanism using a hidden nuclear export signal in the WD40 repeat motif
por: Pauty, Joris, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_v0tga1h6vqrme2r7vp7281194h