Cargando…

Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching

Abiotic stresses affect plant physiology, development, growth, and alter pre-mRNA splicing. Western poplar is a model woody tree and a potential bioenergy feedstock. To investigate the extent of stress-regulated alternative splicing (AS), we conducted an in-depth survey of leaf, root, and stem xylem...

Descripción completa

Detalles Bibliográficos
Autores principales:	Filichkin, Sergei A., Hamilton, Michael, Dharmawardhana, Palitha D., Singh, Sunil K., Sullivan, Christopher, Ben-Hur, Asa, Reddy, Anireddy S. N., Jaiswal, Pankaj
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2018
Materias:	Plant Science
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5816337/ https://www.ncbi.nlm.nih.gov/pubmed/29483921 http://dx.doi.org/10.3389/fpls.2018.00005

Ejemplares similares

Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules
por: Filichkin, Sergei A., et al.
Publicado: (2011)

Exploring the relationship between intron retention and chromatin accessibility in plants
por: Ullah, Fahad, et al.
Publicado: (2018)

Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention
por: Ullah, Fahad, et al.
Publicado: (2023)

Deciphering the Plant Splicing Code: Experimental and Computational Approaches for Predicting Alternative Splicing and Splicing Regulatory Elements
por: Reddy, Anireddy S. N., et al.
Publicado: (2012)

Greenhouse and field evaluation of transgenic poplars with modified gibberellin metabolism and signaling genes
por: Viswanath, Venkatesh, et al.
Publicado: (2011)

Minor intron splicing revisited: identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns
por: Olthof, Anouk M., et al.
Publicado: (2019)

Stress-Induced Changes in Alternative Splicing Landscape in Rice: Functional Significance of Splice Isoforms in Stress Tolerance
por: Ganie, Showkat Ahmad, et al.
Publicado: (2021)

SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data
por: Rogers, Mark F, et al.
Publicado: (2012)

An Alternative Splice Variant of HIPK2 with Intron Retention Contributes to Cytokinesis
por: Gatti, Veronica, et al.
Publicado: (2020)

Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes
por: Filichkin, Sergei A, et al.
Publicado: (2012)

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress
por: Dharmawardhana, Palitha, et al.
Publicado: (2013)

RNA-Seq Analysis of Differential Splice Junction Usage and Intron Retentions by DEXSeq
por: Li, Yafang, et al.
Publicado: (2015)

Intron Retention in the Alternatively Spliced Region of RON Results from Weak 3’ Splice Site Recognition
por: Smith, Lindsay D., et al.
Publicado: (2013)

Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii
por: Labadorf, Adam, et al.
Publicado: (2010)

50/50 Expressional Odds of Retention Signifies the Distinction between Retained Introns and Constitutively Spliced Introns in Arabidopsis thaliana
por: Mao, Rui, et al.
Publicado: (2017)

The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses
por: Butt, Haroon, et al.
Publicado: (2022)

Intron retention is regulated by altered MeCP2-mediated splicing factor recruitment
por: Wong, Justin J. -L., et al.
Publicado: (2017)

Bioinformatics detection of modulators controlling splicing factor‐dependent intron retention in the human brain
por: Chen, Steven X., et al.
Publicado: (2022)

SpliceAI-10k calculator for the prediction of pseudoexonization, intron retention, and exon deletion
por: Canson, Daffodil M, et al.
Publicado: (2023)

Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa
por: Dharmawardhana, Palitha, et al.
Publicado: (2010)

CCK(2) receptor splice variant with intron 4 retention in human gastrointestinal and lung tumours
por: Körner, Meike, et al.
Publicado: (2010)

Targeting the splicing factor NONO inhibits GBM progression through GPX1 intron retention
por: Wang, Xu, et al.
Publicado: (2022)

Mapping intron retention events contributing to complex traits using splice quantitative trait locus
por: Wang, Siyuan, et al.
Publicado: (2023)

FUS ALS-causative mutations impair FUS autoregulation and splicing factor networks through intron retention
por: Humphrey, Jack, et al.
Publicado: (2020)

Genome scale transcriptome analysis of shoot organogenesis in Populus
por: Bao, Yanghuan, et al.
Publicado: (2009)

Intron mis-splicing: no alternative?
por: Roy, Scott William, et al.
Publicado: (2008)

An Alu-derived intronic splicing enhancer facilitates intronic processing and modulates aberrant splicing in ATM
por: Pastor, Tibor, et al.
Publicado: (2009)

Splice and Dice: Intronic microRNAs, Splicing and Cancer
por: Wong, Alex C. H., et al.
Publicado: (2021)

A Novel Pathogenic BRCA1 Splicing Variant Produces Partial Intron Retention in the Mature Messenger RNA
por: Esposito, Maria Valeria, et al.
Publicado: (2016)

An important class of intron retention events in human erythroblasts is regulated by cryptic exons proposed to function as splicing decoys
por: Parra, Marilyn, et al.
Publicado: (2018)

Site-specific reverse splicing of a HEG-containing group I intron in ribosomal RNA
por: Birgisdottir, Åsa B., et al.
Publicado: (2005)

Differential alternative splicing genes and isoform co-expression networks of Brassica napus under multiple abiotic stresses
por: Yang, Lingli, et al.
Publicado: (2022)

Intronic Alus Influence Alternative Splicing
por: Lev-Maor, Galit, et al.
Publicado: (2008)

Looping Out Introns to Help Splicing
por: Robinson, Richard
Publicado: (2006)

The Peculiarities of Large Intron Splicing in Animals
por: Shepard, Samuel, et al.
Publicado: (2009)

Dysregulated minor intron splicing in cancer
por: Nishimura, Koutarou, et al.
Publicado: (2022)

Comparative Analysis of Serine/Arginine-Rich Proteins across 27 Eukaryotes: Insights into Sub-Family Classification and Extent of Alternative Splicing
por: Richardson, Dale N., et al.
Publicado: (2011)

Sequence features responsible for intron retention in human
por: Sakabe, Noboru Jo, et al.
Publicado: (2007)

The global landscape of intron retentions in lung adenocarcinoma
por: Zhang, Qu, et al.
Publicado: (2014)

IntEREst: intron-exon retention estimator
por: Oghabian, Ali, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_cei3fo85odosi7fca5lfvscot4