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Development of a 2-Nitrobenzoate-Sensing Bioreporter Based on an Inducible Gene Cluster

Based on the sole information of structural genes of the 2-nitrobenzoate (2NBA) utilizing catabolic gene cluster (onbX1X2FCAR1EHJIGDBX3), 2NBA-sensing bioreporters were constructed by incorporating egfp into the onb gene cluster of Cupriavidus sp. strain ST-14. Incorporation of reporter gene in prox...

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Autores principales: Deb, Satamita, Basu, Soumik, Singha, Achintya, Dutta, Tapan K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5817917/
https://www.ncbi.nlm.nih.gov/pubmed/29491862
http://dx.doi.org/10.3389/fmicb.2018.00254
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author Deb, Satamita
Basu, Soumik
Singha, Achintya
Dutta, Tapan K.
author_facet Deb, Satamita
Basu, Soumik
Singha, Achintya
Dutta, Tapan K.
author_sort Deb, Satamita
collection PubMed
description Based on the sole information of structural genes of the 2-nitrobenzoate (2NBA) utilizing catabolic gene cluster (onbX1X2FCAR1EHJIGDBX3), 2NBA-sensing bioreporters were constructed by incorporating egfp into the onb gene cluster of Cupriavidus sp. strain ST-14. Incorporation of reporter gene in proximal to the hypothesized promoter region in conjunction with the disruption of the gene encoding inducer-metabolizing enzyme was turned out to be advantageous in reporter gene expression at low inducer concentration. The bioreporter strain was capable of expressing EGFP from the very 1st hour of induction and could detect 2NBA at (sub) nanomolar level exhibiting a strict specificity toward 2NBA, displaying no response to EGFP expression from its meta- and para-isomers as well as from a number of structurally related compounds. The present study is a successful demonstration of the development of a 2NBA-sensing bioreporter with respect to ease of construction, inducer specificity, and sensitivity, without prior knowledge of the associated inducer-responsive promoter-regulator elements. The present approach can be used as a model for the development of bioreporters for other environmental pollutants.
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spelling pubmed-58179172018-02-28 Development of a 2-Nitrobenzoate-Sensing Bioreporter Based on an Inducible Gene Cluster Deb, Satamita Basu, Soumik Singha, Achintya Dutta, Tapan K. Front Microbiol Microbiology Based on the sole information of structural genes of the 2-nitrobenzoate (2NBA) utilizing catabolic gene cluster (onbX1X2FCAR1EHJIGDBX3), 2NBA-sensing bioreporters were constructed by incorporating egfp into the onb gene cluster of Cupriavidus sp. strain ST-14. Incorporation of reporter gene in proximal to the hypothesized promoter region in conjunction with the disruption of the gene encoding inducer-metabolizing enzyme was turned out to be advantageous in reporter gene expression at low inducer concentration. The bioreporter strain was capable of expressing EGFP from the very 1st hour of induction and could detect 2NBA at (sub) nanomolar level exhibiting a strict specificity toward 2NBA, displaying no response to EGFP expression from its meta- and para-isomers as well as from a number of structurally related compounds. The present study is a successful demonstration of the development of a 2NBA-sensing bioreporter with respect to ease of construction, inducer specificity, and sensitivity, without prior knowledge of the associated inducer-responsive promoter-regulator elements. The present approach can be used as a model for the development of bioreporters for other environmental pollutants. Frontiers Media S.A. 2018-02-14 /pmc/articles/PMC5817917/ /pubmed/29491862 http://dx.doi.org/10.3389/fmicb.2018.00254 Text en Copyright © 2018 Deb, Basu, Singha and Dutta. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Deb, Satamita
Basu, Soumik
Singha, Achintya
Dutta, Tapan K.
Development of a 2-Nitrobenzoate-Sensing Bioreporter Based on an Inducible Gene Cluster
title Development of a 2-Nitrobenzoate-Sensing Bioreporter Based on an Inducible Gene Cluster
title_full Development of a 2-Nitrobenzoate-Sensing Bioreporter Based on an Inducible Gene Cluster
title_fullStr Development of a 2-Nitrobenzoate-Sensing Bioreporter Based on an Inducible Gene Cluster
title_full_unstemmed Development of a 2-Nitrobenzoate-Sensing Bioreporter Based on an Inducible Gene Cluster
title_short Development of a 2-Nitrobenzoate-Sensing Bioreporter Based on an Inducible Gene Cluster
title_sort development of a 2-nitrobenzoate-sensing bioreporter based on an inducible gene cluster
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5817917/
https://www.ncbi.nlm.nih.gov/pubmed/29491862
http://dx.doi.org/10.3389/fmicb.2018.00254
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