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Generalized leaky integrate-and-fire models classify multiple neuron types

There is a high diversity of neuronal types in the mammalian neocortex. To facilitate construction of system models with multiple cell types, we generate a database of point models associated with the Allen Cell Types Database. We construct a set of generalized leaky integrate-and-fire (GLIF) models...

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Autores principales: Teeter, Corinne, Iyer, Ramakrishnan, Menon, Vilas, Gouwens, Nathan, Feng, David, Berg, Jim, Szafer, Aaron, Cain, Nicholas, Zeng, Hongkui, Hawrylycz, Michael, Koch, Christof, Mihalas, Stefan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818568/
https://www.ncbi.nlm.nih.gov/pubmed/29459723
http://dx.doi.org/10.1038/s41467-017-02717-4
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author Teeter, Corinne
Iyer, Ramakrishnan
Menon, Vilas
Gouwens, Nathan
Feng, David
Berg, Jim
Szafer, Aaron
Cain, Nicholas
Zeng, Hongkui
Hawrylycz, Michael
Koch, Christof
Mihalas, Stefan
author_facet Teeter, Corinne
Iyer, Ramakrishnan
Menon, Vilas
Gouwens, Nathan
Feng, David
Berg, Jim
Szafer, Aaron
Cain, Nicholas
Zeng, Hongkui
Hawrylycz, Michael
Koch, Christof
Mihalas, Stefan
author_sort Teeter, Corinne
collection PubMed
description There is a high diversity of neuronal types in the mammalian neocortex. To facilitate construction of system models with multiple cell types, we generate a database of point models associated with the Allen Cell Types Database. We construct a set of generalized leaky integrate-and-fire (GLIF) models of increasing complexity to reproduce the spiking behaviors of 645 recorded neurons from 16 transgenic lines. The more complex models have an increased capacity to predict spiking behavior of hold-out stimuli. We use unsupervised methods to classify cell types, and find that high level GLIF model parameters are able to differentiate transgenic lines comparable to electrophysiological features. The more complex model parameters also have an increased ability to differentiate between transgenic lines. Thus, creating simple models is an effective dimensionality reduction technique that enables the differentiation of cell types from electrophysiological responses without the need for a priori-defined features. This database will provide a set of simplified models of multiple cell types for the community to use in network models.
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spelling pubmed-58185682018-02-22 Generalized leaky integrate-and-fire models classify multiple neuron types Teeter, Corinne Iyer, Ramakrishnan Menon, Vilas Gouwens, Nathan Feng, David Berg, Jim Szafer, Aaron Cain, Nicholas Zeng, Hongkui Hawrylycz, Michael Koch, Christof Mihalas, Stefan Nat Commun Article There is a high diversity of neuronal types in the mammalian neocortex. To facilitate construction of system models with multiple cell types, we generate a database of point models associated with the Allen Cell Types Database. We construct a set of generalized leaky integrate-and-fire (GLIF) models of increasing complexity to reproduce the spiking behaviors of 645 recorded neurons from 16 transgenic lines. The more complex models have an increased capacity to predict spiking behavior of hold-out stimuli. We use unsupervised methods to classify cell types, and find that high level GLIF model parameters are able to differentiate transgenic lines comparable to electrophysiological features. The more complex model parameters also have an increased ability to differentiate between transgenic lines. Thus, creating simple models is an effective dimensionality reduction technique that enables the differentiation of cell types from electrophysiological responses without the need for a priori-defined features. This database will provide a set of simplified models of multiple cell types for the community to use in network models. Nature Publishing Group UK 2018-02-19 /pmc/articles/PMC5818568/ /pubmed/29459723 http://dx.doi.org/10.1038/s41467-017-02717-4 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Teeter, Corinne
Iyer, Ramakrishnan
Menon, Vilas
Gouwens, Nathan
Feng, David
Berg, Jim
Szafer, Aaron
Cain, Nicholas
Zeng, Hongkui
Hawrylycz, Michael
Koch, Christof
Mihalas, Stefan
Generalized leaky integrate-and-fire models classify multiple neuron types
title Generalized leaky integrate-and-fire models classify multiple neuron types
title_full Generalized leaky integrate-and-fire models classify multiple neuron types
title_fullStr Generalized leaky integrate-and-fire models classify multiple neuron types
title_full_unstemmed Generalized leaky integrate-and-fire models classify multiple neuron types
title_short Generalized leaky integrate-and-fire models classify multiple neuron types
title_sort generalized leaky integrate-and-fire models classify multiple neuron types
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818568/
https://www.ncbi.nlm.nih.gov/pubmed/29459723
http://dx.doi.org/10.1038/s41467-017-02717-4
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