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Generalized leaky integrate-and-fire models classify multiple neuron types
There is a high diversity of neuronal types in the mammalian neocortex. To facilitate construction of system models with multiple cell types, we generate a database of point models associated with the Allen Cell Types Database. We construct a set of generalized leaky integrate-and-fire (GLIF) models...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818568/ https://www.ncbi.nlm.nih.gov/pubmed/29459723 http://dx.doi.org/10.1038/s41467-017-02717-4 |
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author | Teeter, Corinne Iyer, Ramakrishnan Menon, Vilas Gouwens, Nathan Feng, David Berg, Jim Szafer, Aaron Cain, Nicholas Zeng, Hongkui Hawrylycz, Michael Koch, Christof Mihalas, Stefan |
author_facet | Teeter, Corinne Iyer, Ramakrishnan Menon, Vilas Gouwens, Nathan Feng, David Berg, Jim Szafer, Aaron Cain, Nicholas Zeng, Hongkui Hawrylycz, Michael Koch, Christof Mihalas, Stefan |
author_sort | Teeter, Corinne |
collection | PubMed |
description | There is a high diversity of neuronal types in the mammalian neocortex. To facilitate construction of system models with multiple cell types, we generate a database of point models associated with the Allen Cell Types Database. We construct a set of generalized leaky integrate-and-fire (GLIF) models of increasing complexity to reproduce the spiking behaviors of 645 recorded neurons from 16 transgenic lines. The more complex models have an increased capacity to predict spiking behavior of hold-out stimuli. We use unsupervised methods to classify cell types, and find that high level GLIF model parameters are able to differentiate transgenic lines comparable to electrophysiological features. The more complex model parameters also have an increased ability to differentiate between transgenic lines. Thus, creating simple models is an effective dimensionality reduction technique that enables the differentiation of cell types from electrophysiological responses without the need for a priori-defined features. This database will provide a set of simplified models of multiple cell types for the community to use in network models. |
format | Online Article Text |
id | pubmed-5818568 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-58185682018-02-22 Generalized leaky integrate-and-fire models classify multiple neuron types Teeter, Corinne Iyer, Ramakrishnan Menon, Vilas Gouwens, Nathan Feng, David Berg, Jim Szafer, Aaron Cain, Nicholas Zeng, Hongkui Hawrylycz, Michael Koch, Christof Mihalas, Stefan Nat Commun Article There is a high diversity of neuronal types in the mammalian neocortex. To facilitate construction of system models with multiple cell types, we generate a database of point models associated with the Allen Cell Types Database. We construct a set of generalized leaky integrate-and-fire (GLIF) models of increasing complexity to reproduce the spiking behaviors of 645 recorded neurons from 16 transgenic lines. The more complex models have an increased capacity to predict spiking behavior of hold-out stimuli. We use unsupervised methods to classify cell types, and find that high level GLIF model parameters are able to differentiate transgenic lines comparable to electrophysiological features. The more complex model parameters also have an increased ability to differentiate between transgenic lines. Thus, creating simple models is an effective dimensionality reduction technique that enables the differentiation of cell types from electrophysiological responses without the need for a priori-defined features. This database will provide a set of simplified models of multiple cell types for the community to use in network models. Nature Publishing Group UK 2018-02-19 /pmc/articles/PMC5818568/ /pubmed/29459723 http://dx.doi.org/10.1038/s41467-017-02717-4 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Teeter, Corinne Iyer, Ramakrishnan Menon, Vilas Gouwens, Nathan Feng, David Berg, Jim Szafer, Aaron Cain, Nicholas Zeng, Hongkui Hawrylycz, Michael Koch, Christof Mihalas, Stefan Generalized leaky integrate-and-fire models classify multiple neuron types |
title | Generalized leaky integrate-and-fire models classify multiple neuron types |
title_full | Generalized leaky integrate-and-fire models classify multiple neuron types |
title_fullStr | Generalized leaky integrate-and-fire models classify multiple neuron types |
title_full_unstemmed | Generalized leaky integrate-and-fire models classify multiple neuron types |
title_short | Generalized leaky integrate-and-fire models classify multiple neuron types |
title_sort | generalized leaky integrate-and-fire models classify multiple neuron types |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818568/ https://www.ncbi.nlm.nih.gov/pubmed/29459723 http://dx.doi.org/10.1038/s41467-017-02717-4 |
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