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Imaging genotyping of functional signaling pathways in lung squamous cell carcinoma using a radiomics approach
Imaging features can be useful for identifying distinct genomic differences and have predictive power for certain phenotypes attributed to genomic mutations. We aimed to identify predictive imaging biomarkers that underpin genomic alterations and clinical outcomes in lung squamous cell carcinoma (SQ...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818618/ https://www.ncbi.nlm.nih.gov/pubmed/29459639 http://dx.doi.org/10.1038/s41598-018-21706-1 |
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author | Bak, So Hyeon Park, Hyunjin Lee, Ho Yun Kim, Youngwook Kim, Hyung-Lae Jung, Sin-Ho Kim, Hyeseung Kim, Jonghoon Park, Keunchil |
author_facet | Bak, So Hyeon Park, Hyunjin Lee, Ho Yun Kim, Youngwook Kim, Hyung-Lae Jung, Sin-Ho Kim, Hyeseung Kim, Jonghoon Park, Keunchil |
author_sort | Bak, So Hyeon |
collection | PubMed |
description | Imaging features can be useful for identifying distinct genomic differences and have predictive power for certain phenotypes attributed to genomic mutations. We aimed to identify predictive imaging biomarkers that underpin genomic alterations and clinical outcomes in lung squamous cell carcinoma (SQCC) using a radiomics approach. In 57 patients with lung SQCC who underwent preoperative computed tomography (CT) and whole-exome DNA sequencing, 63 quantitative imaging features were extracted from CT and 73 clinicoradiological features including imaging features were classified into 8 categories: clinical, global, histogram-based, lung cancer-specific, shape, local, regional, and emphysema. Mutational profiles for core signaling pathways of lung SQCC were classified into five categories: redox stress, apoptosis, proliferation, differentiation, and chromatin remodelers. Range and right lung volume was significantly associated with alternation of apoptosis and proliferation pathway (p = 0.03, and p = 0.03). Energy was associated with the redox stress pathway (p = 0.06). None of the clinicoradiological features showed any significant association with the alteration of differentiation and chromatin remodelers pathway. This study showed that radiomic features indicating five different functional pathways of lung SQCC were different form one another. Radiomics approaches to lung SQCC have the potential to noninvasively predict alterations in core signaling pathways and clinical outcome. |
format | Online Article Text |
id | pubmed-5818618 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-58186182018-02-26 Imaging genotyping of functional signaling pathways in lung squamous cell carcinoma using a radiomics approach Bak, So Hyeon Park, Hyunjin Lee, Ho Yun Kim, Youngwook Kim, Hyung-Lae Jung, Sin-Ho Kim, Hyeseung Kim, Jonghoon Park, Keunchil Sci Rep Article Imaging features can be useful for identifying distinct genomic differences and have predictive power for certain phenotypes attributed to genomic mutations. We aimed to identify predictive imaging biomarkers that underpin genomic alterations and clinical outcomes in lung squamous cell carcinoma (SQCC) using a radiomics approach. In 57 patients with lung SQCC who underwent preoperative computed tomography (CT) and whole-exome DNA sequencing, 63 quantitative imaging features were extracted from CT and 73 clinicoradiological features including imaging features were classified into 8 categories: clinical, global, histogram-based, lung cancer-specific, shape, local, regional, and emphysema. Mutational profiles for core signaling pathways of lung SQCC were classified into five categories: redox stress, apoptosis, proliferation, differentiation, and chromatin remodelers. Range and right lung volume was significantly associated with alternation of apoptosis and proliferation pathway (p = 0.03, and p = 0.03). Energy was associated with the redox stress pathway (p = 0.06). None of the clinicoradiological features showed any significant association with the alteration of differentiation and chromatin remodelers pathway. This study showed that radiomic features indicating five different functional pathways of lung SQCC were different form one another. Radiomics approaches to lung SQCC have the potential to noninvasively predict alterations in core signaling pathways and clinical outcome. Nature Publishing Group UK 2018-02-19 /pmc/articles/PMC5818618/ /pubmed/29459639 http://dx.doi.org/10.1038/s41598-018-21706-1 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Bak, So Hyeon Park, Hyunjin Lee, Ho Yun Kim, Youngwook Kim, Hyung-Lae Jung, Sin-Ho Kim, Hyeseung Kim, Jonghoon Park, Keunchil Imaging genotyping of functional signaling pathways in lung squamous cell carcinoma using a radiomics approach |
title | Imaging genotyping of functional signaling pathways in lung squamous cell carcinoma using a radiomics approach |
title_full | Imaging genotyping of functional signaling pathways in lung squamous cell carcinoma using a radiomics approach |
title_fullStr | Imaging genotyping of functional signaling pathways in lung squamous cell carcinoma using a radiomics approach |
title_full_unstemmed | Imaging genotyping of functional signaling pathways in lung squamous cell carcinoma using a radiomics approach |
title_short | Imaging genotyping of functional signaling pathways in lung squamous cell carcinoma using a radiomics approach |
title_sort | imaging genotyping of functional signaling pathways in lung squamous cell carcinoma using a radiomics approach |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818618/ https://www.ncbi.nlm.nih.gov/pubmed/29459639 http://dx.doi.org/10.1038/s41598-018-21706-1 |
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