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Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica
Catalase is an essential antioxidant enzyme that is well characterized from microbial and animal sources. The structure of plant catalase is unknown. Therefore, it is of interest to understand the functional and structural characteristics of catalase from an Indian gooseberry, Phyllanthus emblica (o...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818641/ https://www.ncbi.nlm.nih.gov/pubmed/29497254 http://dx.doi.org/10.6026/97320630014008 |
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author | Sharma, Swati Hooda, Vinita |
author_facet | Sharma, Swati Hooda, Vinita |
author_sort | Sharma, Swati |
collection | PubMed |
description | Catalase is an essential antioxidant enzyme that is well characterized from microbial and animal sources. The structure of plant catalase is unknown. Therefore, it is of interest to understand the functional and structural characteristics of catalase from an Indian gooseberry, Phyllanthus emblica (or Emblica officinalis). Hence, catalase from P. emblica was cloned in pUC18 plasmid, sequenced and submitted to GenBank with the accession numbers "MF979112" and "ATO98311.1". InterProScan showed that the coding sequence is monofunctional and haem-dependent catalase-like superfamily. Multiple sequence alignment (MSA) followed by phylogenetic analysis showed that the P. emblica catalase groups with soybean catalase. We further report the characteristics of structural model of the enzyme for functional characterization. |
format | Online Article Text |
id | pubmed-5818641 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-58186412018-03-01 Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica Sharma, Swati Hooda, Vinita Bioinformation Hypothesis Catalase is an essential antioxidant enzyme that is well characterized from microbial and animal sources. The structure of plant catalase is unknown. Therefore, it is of interest to understand the functional and structural characteristics of catalase from an Indian gooseberry, Phyllanthus emblica (or Emblica officinalis). Hence, catalase from P. emblica was cloned in pUC18 plasmid, sequenced and submitted to GenBank with the accession numbers "MF979112" and "ATO98311.1". InterProScan showed that the coding sequence is monofunctional and haem-dependent catalase-like superfamily. Multiple sequence alignment (MSA) followed by phylogenetic analysis showed that the P. emblica catalase groups with soybean catalase. We further report the characteristics of structural model of the enzyme for functional characterization. Biomedical Informatics 2018-01-31 /pmc/articles/PMC5818641/ /pubmed/29497254 http://dx.doi.org/10.6026/97320630014008 Text en © 2018 Biomedical Informatics http://creativecommons.org/licenses/by/3.0/ This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License. |
spellingShingle | Hypothesis Sharma, Swati Hooda, Vinita Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica |
title | Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica |
title_full | Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica |
title_fullStr | Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica |
title_full_unstemmed | Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica |
title_short | Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica |
title_sort | identification of coding sequence and its use for functional and structural characterization of catalase from phyllanthus emblica |
topic | Hypothesis |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818641/ https://www.ncbi.nlm.nih.gov/pubmed/29497254 http://dx.doi.org/10.6026/97320630014008 |
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