Cargando…

Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica

Catalase is an essential antioxidant enzyme that is well characterized from microbial and animal sources. The structure of plant catalase is unknown. Therefore, it is of interest to understand the functional and structural characteristics of catalase from an Indian gooseberry, Phyllanthus emblica (o...

Descripción completa

Detalles Bibliográficos
Autores principales: Sharma, Swati, Hooda, Vinita
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818641/
https://www.ncbi.nlm.nih.gov/pubmed/29497254
http://dx.doi.org/10.6026/97320630014008
_version_ 1783301065883516928
author Sharma, Swati
Hooda, Vinita
author_facet Sharma, Swati
Hooda, Vinita
author_sort Sharma, Swati
collection PubMed
description Catalase is an essential antioxidant enzyme that is well characterized from microbial and animal sources. The structure of plant catalase is unknown. Therefore, it is of interest to understand the functional and structural characteristics of catalase from an Indian gooseberry, Phyllanthus emblica (or Emblica officinalis). Hence, catalase from P. emblica was cloned in pUC18 plasmid, sequenced and submitted to GenBank with the accession numbers "MF979112" and "ATO98311.1". InterProScan showed that the coding sequence is monofunctional and haem-dependent catalase-like superfamily. Multiple sequence alignment (MSA) followed by phylogenetic analysis showed that the P. emblica catalase groups with soybean catalase. We further report the characteristics of structural model of the enzyme for functional characterization.
format Online
Article
Text
id pubmed-5818641
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Biomedical Informatics
record_format MEDLINE/PubMed
spelling pubmed-58186412018-03-01 Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica Sharma, Swati Hooda, Vinita Bioinformation Hypothesis Catalase is an essential antioxidant enzyme that is well characterized from microbial and animal sources. The structure of plant catalase is unknown. Therefore, it is of interest to understand the functional and structural characteristics of catalase from an Indian gooseberry, Phyllanthus emblica (or Emblica officinalis). Hence, catalase from P. emblica was cloned in pUC18 plasmid, sequenced and submitted to GenBank with the accession numbers "MF979112" and "ATO98311.1". InterProScan showed that the coding sequence is monofunctional and haem-dependent catalase-like superfamily. Multiple sequence alignment (MSA) followed by phylogenetic analysis showed that the P. emblica catalase groups with soybean catalase. We further report the characteristics of structural model of the enzyme for functional characterization. Biomedical Informatics 2018-01-31 /pmc/articles/PMC5818641/ /pubmed/29497254 http://dx.doi.org/10.6026/97320630014008 Text en © 2018 Biomedical Informatics http://creativecommons.org/licenses/by/3.0/ This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Hypothesis
Sharma, Swati
Hooda, Vinita
Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica
title Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica
title_full Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica
title_fullStr Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica
title_full_unstemmed Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica
title_short Identification of coding sequence and its use for functional and structural characterization of catalase from Phyllanthus emblica
title_sort identification of coding sequence and its use for functional and structural characterization of catalase from phyllanthus emblica
topic Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818641/
https://www.ncbi.nlm.nih.gov/pubmed/29497254
http://dx.doi.org/10.6026/97320630014008
work_keys_str_mv AT sharmaswati identificationofcodingsequenceanditsuseforfunctionalandstructuralcharacterizationofcatalasefromphyllanthusemblica
AT hoodavinita identificationofcodingsequenceanditsuseforfunctionalandstructuralcharacterizationofcatalasefromphyllanthusemblica