Cargando…

Multiresolution Consensus Clustering in Networks

Networks often exhibit structure at disparate scales. We propose a method for identifying community structure at different scales based on multiresolution modularity and consensus clustering. Our contribution consists of two parts. First, we propose a strategy for sampling the entire range of possib...

Descripción completa

Detalles Bibliográficos
Autores principales: Jeub, Lucas G. S., Sporns, Olaf, Fortunato, Santo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818657/
https://www.ncbi.nlm.nih.gov/pubmed/29459635
http://dx.doi.org/10.1038/s41598-018-21352-7
_version_ 1783301069637419008
author Jeub, Lucas G. S.
Sporns, Olaf
Fortunato, Santo
author_facet Jeub, Lucas G. S.
Sporns, Olaf
Fortunato, Santo
author_sort Jeub, Lucas G. S.
collection PubMed
description Networks often exhibit structure at disparate scales. We propose a method for identifying community structure at different scales based on multiresolution modularity and consensus clustering. Our contribution consists of two parts. First, we propose a strategy for sampling the entire range of possible resolutions for the multiresolution modularity quality function. Our approach is directly based on the properties of modularity and, in particular, provides a natural way of avoiding the need to increase the resolution parameter by several orders of magnitude to break a few remaining small communities, necessitating the introduction of ad-hoc limits to the resolution range with standard sampling approaches. Second, we propose a hierarchical consensus clustering procedure, based on a modified modularity, that allows one to construct a hierarchical consensus structure given a set of input partitions. While here we are interested in its application to partitions sampled using multiresolution modularity, this consensus clustering procedure can be applied to the output of any clustering algorithm. As such, we see many potential applications of the individual parts of our multiresolution consensus clustering procedure in addition to using the procedure itself to identify hierarchical structure in networks.
format Online
Article
Text
id pubmed-5818657
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-58186572018-02-26 Multiresolution Consensus Clustering in Networks Jeub, Lucas G. S. Sporns, Olaf Fortunato, Santo Sci Rep Article Networks often exhibit structure at disparate scales. We propose a method for identifying community structure at different scales based on multiresolution modularity and consensus clustering. Our contribution consists of two parts. First, we propose a strategy for sampling the entire range of possible resolutions for the multiresolution modularity quality function. Our approach is directly based on the properties of modularity and, in particular, provides a natural way of avoiding the need to increase the resolution parameter by several orders of magnitude to break a few remaining small communities, necessitating the introduction of ad-hoc limits to the resolution range with standard sampling approaches. Second, we propose a hierarchical consensus clustering procedure, based on a modified modularity, that allows one to construct a hierarchical consensus structure given a set of input partitions. While here we are interested in its application to partitions sampled using multiresolution modularity, this consensus clustering procedure can be applied to the output of any clustering algorithm. As such, we see many potential applications of the individual parts of our multiresolution consensus clustering procedure in addition to using the procedure itself to identify hierarchical structure in networks. Nature Publishing Group UK 2018-02-19 /pmc/articles/PMC5818657/ /pubmed/29459635 http://dx.doi.org/10.1038/s41598-018-21352-7 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Jeub, Lucas G. S.
Sporns, Olaf
Fortunato, Santo
Multiresolution Consensus Clustering in Networks
title Multiresolution Consensus Clustering in Networks
title_full Multiresolution Consensus Clustering in Networks
title_fullStr Multiresolution Consensus Clustering in Networks
title_full_unstemmed Multiresolution Consensus Clustering in Networks
title_short Multiresolution Consensus Clustering in Networks
title_sort multiresolution consensus clustering in networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5818657/
https://www.ncbi.nlm.nih.gov/pubmed/29459635
http://dx.doi.org/10.1038/s41598-018-21352-7
work_keys_str_mv AT jeublucasgs multiresolutionconsensusclusteringinnetworks
AT spornsolaf multiresolutionconsensusclusteringinnetworks
AT fortunatosanto multiresolutionconsensusclusteringinnetworks