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miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal

Hundreds of bioinformatics tools have been developed for MicroRNA (miRNA) investigations including those used for identification, target prediction, structure and expression profile analysis. However, finding the correct tool for a specific application requires the tedious and laborious process of l...

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Detalles Bibliográficos
Autores principales: Chen, Liang, Heikkinen, Liisa, Wang, ChangLiang, Yang, Yang, Knott, K Emily, Wong, Garry
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819725/
https://www.ncbi.nlm.nih.gov/pubmed/29688355
http://dx.doi.org/10.1093/database/bay004
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author Chen, Liang
Heikkinen, Liisa
Wang, ChangLiang
Yang, Yang
Knott, K Emily
Wong, Garry
author_facet Chen, Liang
Heikkinen, Liisa
Wang, ChangLiang
Yang, Yang
Knott, K Emily
Wong, Garry
author_sort Chen, Liang
collection PubMed
description Hundreds of bioinformatics tools have been developed for MicroRNA (miRNA) investigations including those used for identification, target prediction, structure and expression profile analysis. However, finding the correct tool for a specific application requires the tedious and laborious process of locating, downloading, testing and validating the appropriate tool from a group of nearly a thousand. In order to facilitate this process, we developed a novel database portal named miRToolsGallery. We constructed the portal by manually curating > 950 miRNA analysis tools and resources. In the portal, a query to locate the appropriate tool is expedited by being searchable, filterable and rankable. The ranking feature is vital to quickly identify and prioritize the more useful from the obscure tools. Tools are ranked via different criteria including the PageRank algorithm, date of publication, number of citations, average of votes and number of publications. miRToolsGallery provides links and data for the comprehensive collection of currently available miRNA tools with a ranking function which can be adjusted using different criteria according to specific requirements. Database URL: http://www.mirtoolsgallery.org
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spelling pubmed-58197252018-02-26 miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal Chen, Liang Heikkinen, Liisa Wang, ChangLiang Yang, Yang Knott, K Emily Wong, Garry Database (Oxford) Database Tool Hundreds of bioinformatics tools have been developed for MicroRNA (miRNA) investigations including those used for identification, target prediction, structure and expression profile analysis. However, finding the correct tool for a specific application requires the tedious and laborious process of locating, downloading, testing and validating the appropriate tool from a group of nearly a thousand. In order to facilitate this process, we developed a novel database portal named miRToolsGallery. We constructed the portal by manually curating > 950 miRNA analysis tools and resources. In the portal, a query to locate the appropriate tool is expedited by being searchable, filterable and rankable. The ranking feature is vital to quickly identify and prioritize the more useful from the obscure tools. Tools are ranked via different criteria including the PageRank algorithm, date of publication, number of citations, average of votes and number of publications. miRToolsGallery provides links and data for the comprehensive collection of currently available miRNA tools with a ranking function which can be adjusted using different criteria according to specific requirements. Database URL: http://www.mirtoolsgallery.org Oxford University Press 2018-02-19 /pmc/articles/PMC5819725/ /pubmed/29688355 http://dx.doi.org/10.1093/database/bay004 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Tool
Chen, Liang
Heikkinen, Liisa
Wang, ChangLiang
Yang, Yang
Knott, K Emily
Wong, Garry
miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal
title miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal
title_full miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal
title_fullStr miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal
title_full_unstemmed miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal
title_short miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal
title_sort mirtoolsgallery: a tag-based and rankable microrna bioinformatics resources database portal
topic Database Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819725/
https://www.ncbi.nlm.nih.gov/pubmed/29688355
http://dx.doi.org/10.1093/database/bay004
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