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miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal
Hundreds of bioinformatics tools have been developed for MicroRNA (miRNA) investigations including those used for identification, target prediction, structure and expression profile analysis. However, finding the correct tool for a specific application requires the tedious and laborious process of l...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819725/ https://www.ncbi.nlm.nih.gov/pubmed/29688355 http://dx.doi.org/10.1093/database/bay004 |
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author | Chen, Liang Heikkinen, Liisa Wang, ChangLiang Yang, Yang Knott, K Emily Wong, Garry |
author_facet | Chen, Liang Heikkinen, Liisa Wang, ChangLiang Yang, Yang Knott, K Emily Wong, Garry |
author_sort | Chen, Liang |
collection | PubMed |
description | Hundreds of bioinformatics tools have been developed for MicroRNA (miRNA) investigations including those used for identification, target prediction, structure and expression profile analysis. However, finding the correct tool for a specific application requires the tedious and laborious process of locating, downloading, testing and validating the appropriate tool from a group of nearly a thousand. In order to facilitate this process, we developed a novel database portal named miRToolsGallery. We constructed the portal by manually curating > 950 miRNA analysis tools and resources. In the portal, a query to locate the appropriate tool is expedited by being searchable, filterable and rankable. The ranking feature is vital to quickly identify and prioritize the more useful from the obscure tools. Tools are ranked via different criteria including the PageRank algorithm, date of publication, number of citations, average of votes and number of publications. miRToolsGallery provides links and data for the comprehensive collection of currently available miRNA tools with a ranking function which can be adjusted using different criteria according to specific requirements. Database URL: http://www.mirtoolsgallery.org |
format | Online Article Text |
id | pubmed-5819725 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-58197252018-02-26 miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal Chen, Liang Heikkinen, Liisa Wang, ChangLiang Yang, Yang Knott, K Emily Wong, Garry Database (Oxford) Database Tool Hundreds of bioinformatics tools have been developed for MicroRNA (miRNA) investigations including those used for identification, target prediction, structure and expression profile analysis. However, finding the correct tool for a specific application requires the tedious and laborious process of locating, downloading, testing and validating the appropriate tool from a group of nearly a thousand. In order to facilitate this process, we developed a novel database portal named miRToolsGallery. We constructed the portal by manually curating > 950 miRNA analysis tools and resources. In the portal, a query to locate the appropriate tool is expedited by being searchable, filterable and rankable. The ranking feature is vital to quickly identify and prioritize the more useful from the obscure tools. Tools are ranked via different criteria including the PageRank algorithm, date of publication, number of citations, average of votes and number of publications. miRToolsGallery provides links and data for the comprehensive collection of currently available miRNA tools with a ranking function which can be adjusted using different criteria according to specific requirements. Database URL: http://www.mirtoolsgallery.org Oxford University Press 2018-02-19 /pmc/articles/PMC5819725/ /pubmed/29688355 http://dx.doi.org/10.1093/database/bay004 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Tool Chen, Liang Heikkinen, Liisa Wang, ChangLiang Yang, Yang Knott, K Emily Wong, Garry miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal |
title | miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal |
title_full | miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal |
title_fullStr | miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal |
title_full_unstemmed | miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal |
title_short | miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal |
title_sort | mirtoolsgallery: a tag-based and rankable microrna bioinformatics resources database portal |
topic | Database Tool |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819725/ https://www.ncbi.nlm.nih.gov/pubmed/29688355 http://dx.doi.org/10.1093/database/bay004 |
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