Cargando…

Genome-wide identification and analysis of A-to-I RNA editing events in bovine by transcriptome sequencing

RNA editing increases the diversity of the transcriptome and proteome. Adenosine-to-inosine (A-to-I) editing is the predominant type of RNA editing in mammals and it is catalyzed by the adenosine deaminases acting on RNA (ADARs) family. Here, we used a largescale computational analysis of transcript...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bakhtiarizadeh, Mohammad Reza, Salehi, Abdolreza, Rivera, Rocío Melissa
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5823453/ https://www.ncbi.nlm.nih.gov/pubmed/29470549 http://dx.doi.org/10.1371/journal.pone.0193316

Ejemplares similares

An integrated analysis of mRNAs, lncRNAs, and miRNAs based on weighted gene co-expression network analysis involved in bovine endometritis
por: Sheybani, Negin, et al.
Publicado: (2021)

Transcriptome analysis reveals the potential roles of long non-coding RNAs in feed efficiency of chicken
por: Karimi, Parastoo, et al.
Publicado: (2022)

Meta-analysis of RNA-Seq datasets highlights novel genes/pathways involved in fat deposition in fat-tail of sheep
por: Hosseini, Seyedeh Fatemeh, et al.
Publicado: (2023)

Deep transcriptome analysis using RNA-Seq suggests novel insights into molecular aspects of fat-tail metabolism in sheep
por: Bakhtiarizadeh, Mohammad Reza, et al.
Publicado: (2019)

Investigation of the transability of dietary small non-coding RNAs to animals
por: Norouzi, Milad, et al.
Publicado: (2022)

Genome-Wide Characterization of RNA Editing Sites in Primary Gastric Adenocarcinoma through RNA-seq Data Analysis
por: Behroozi, Javad, et al.
Publicado: (2020)

Genome-Wide Identification and Analysis of Variants in Domestic and Wild Bactrian Camels Using Whole-Genome Sequencing Data
por: Hedayat-Evrigh, Nemat, et al.
Publicado: (2020)

Genome-Wide Identification of Microsatellites and Transposable Elements in the Dromedary Camel Genome Using Whole-Genome Sequencing Data
por: Khalkhali-Evrigh, Reza, et al.
Publicado: (2019)

Genome-wide identification of A-to-I RNA editing events provides the functional implications in PDAC
por: Mei, Yue, et al.
Publicado: (2023)

Transcriptome-wide profiling of A-to-I RNA editing by Slic-seq
por: Wei, Qi, et al.
Publicado: (2023)

RNA-Seq Bayesian Network Exploration of Immune System in Bovine
por: Behdani, Elham, et al.
Publicado: (2019)

RNA-Seq Analysis of Magnaporthe grisea Transcriptome Reveals the High Potential of ZnO Nanoparticles as a Nanofungicide
por: Ghamari, Reza, et al.
Publicado: (2022)

Integrated co-expression analysis of regulatory elements (miRNA, lncRNA, and TFs) in bovine monocytes induced by Str. uberis
por: Sharifi, Somayeh, et al.
Publicado: (2023)

Discriminative Prediction of A-To-I RNA Editing Events from DNA Sequence
por: Sun, Jiangming, et al.
Publicado: (2016)

Genome-Wide Identification of U-To-C RNA Editing Events for Nuclear Genes in Arabidopsis thaliana
por: Ruchika,, et al.
Publicado: (2021)

Transcriptome analysis identification of A-to-I RNA editing in granulosa cells associated with PCOS
por: Kong, Fan-Sheng, et al.
Publicado: (2023)

DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using nanopore direct RNA sequencing
por: Chen, Longxian, et al.
Publicado: (2023)

Identification and Expression Analysis of Long Noncoding RNAs in Fat-Tail of Sheep Breeds
por: Bakhtiarizadeh, Mohammad Reza, et al.
Publicado: (2019)

JACUSA: site-specific identification of RNA editing events from replicate sequencing data
por: Piechotta, Michael, et al.
Publicado: (2017)

Identification of Symmetrical RNA Editing Events in the Mitochondria of Salvia miltiorrhiza by Strand-specific RNA Sequencing
por: Wu, Bin, et al.
Publicado: (2017)

Transcriptome-Wide Identification of G-to-A RNA Editing in Chronic Social Defeat Stress Mouse Models
por: Tao, Ji, et al.
Publicado: (2021)

Altered microRNA expression profiles in large offspring syndrome and Beckwith-Wiedemann syndrome
por: Li, Yahan, et al.
Publicado: (2019)

Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA editing targets in transcript 3′ UTRs
por: Rosenberg, Brad R., et al.
Publicado: (2011)

Combining independent de novo assemblies to optimize leaf transcriptome of Persian walnut
por: Sadat-Hosseini, Mohammad, et al.
Publicado: (2020)

Genome-wide identification of RNA editing in seven porcine tissues by matched DNA and RNA high-throughput sequencing
por: Zhang, Yuebo, et al.
Publicado: (2019)

Identification and analysis of microRNA editing events in recurrent bladder cancer based on RNA sequencing: MicroRNA editing level is a potential novel biomarker
por: Qin, Jia-Xin, et al.
Publicado: (2022)

Editing inducer elements increases A-to-I editing efficiency in the mammalian transcriptome
por: Daniel, Chammiran, et al.
Publicado: (2017)

Principles Governing A-to-I RNA Editing in the Breast Cancer Transcriptome
por: Fumagalli, Debora, et al.
Publicado: (2015)

Population and allelic variation of A-to-I RNA editing in human transcriptomes
por: Park, Eddie, et al.
Publicado: (2017)

Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing
por: Mazloomian, Alborz, et al.
Publicado: (2015)

Genome Sequence-Independent Identification of RNA Editing Sites
por: Zhang, Qing, et al.
Publicado: (2015)

RNA-Seq based genetic variant discovery provides new insights into controlling fat deposition in the tail of sheep
por: Bakhtiarizadeh, Mohammad Reza, et al.
Publicado: (2020)

Prediction of constitutive A-to-I editing sites from human transcriptomes in the absence of genomic sequences
por: Zhu, Shanshan, et al.
Publicado: (2013)

Genome-wide identification and analysis of A-to-I RNA editing events in the malignantly transformed cell lines from bronchial epithelial cell line induced by α-particles radiation
por: Liu, Qiaowei, et al.
Publicado: (2019)

De novo RNA sequencing analysis of Aeluropus littoralis halophyte plant under salinity stress
por: Younesi-Melerdi, Elham, et al.
Publicado: (2020)

Genome-wide characterization of RNA editing highlights roles of high editing events of glutamatergic synapse during mouse retinal development
por: Li, Chenghao, et al.
Publicado: (2022)

Genome-wide A-to-I RNA editing in fungi independent of ADAR enzymes
por: Liu, Huiquan, et al.
Publicado: (2016)

Identification of microRNA Transcriptome Involved in Bovine Intramuscular Fat Deposition
por: Duckett, Susan K., et al.
Publicado: (2022)

Identification of differentially expressed microRNAs in primary esophageal achalasia by next-generation sequencing
por: GHOLIPOUR, Mahin, et al.
Publicado: (2021)

REDIportal: a comprehensive database of A-to-I RNA editing events in humans
por: Picardi, Ernesto, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_7khuk6sp1b5rb16d6tov9e4ll0