Cargando…

Novel metrics for growth model selection

BACKGROUND: Literature surrounding the statistical modeling of childhood growth data involves a diverse set of potential models from which investigators can choose. However, the lack of a comprehensive framework for comparing non-nested models leads to difficulty in assessing model performance. This...

Descripción completa

Detalles Bibliográficos
Autores principales: Grigsby, Matthew R., Di, Junrui, Leroux, Andrew, Zipunnikov, Vadim, Xiao, Luo, Crainiceanu, Ciprian, Checkley, William
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5824542/
https://www.ncbi.nlm.nih.gov/pubmed/29483933
http://dx.doi.org/10.1186/s12982-018-0072-z
_version_ 1783302046871453696
author Grigsby, Matthew R.
Di, Junrui
Leroux, Andrew
Zipunnikov, Vadim
Xiao, Luo
Crainiceanu, Ciprian
Checkley, William
author_facet Grigsby, Matthew R.
Di, Junrui
Leroux, Andrew
Zipunnikov, Vadim
Xiao, Luo
Crainiceanu, Ciprian
Checkley, William
author_sort Grigsby, Matthew R.
collection PubMed
description BACKGROUND: Literature surrounding the statistical modeling of childhood growth data involves a diverse set of potential models from which investigators can choose. However, the lack of a comprehensive framework for comparing non-nested models leads to difficulty in assessing model performance. This paper proposes a framework for comparing non-nested growth models using novel metrics of predictive accuracy based on modifications of the mean squared error criteria. METHODS: Three metrics were created: normalized, age-adjusted, and weighted mean squared error (MSE). Predictive performance metrics were used to compare linear mixed effects models and functional regression models. Prediction accuracy was assessed by partitioning the observed data into training and test datasets. This partitioning was constructed to assess prediction accuracy for backward (i.e., early growth), forward (i.e., late growth), in-range, and on new-individuals. Analyses were done with height measurements from 215 Peruvian children with data spanning from near birth to 2 years of age. RESULTS: Functional models outperformed linear mixed effects models in all scenarios tested. In particular, prediction errors for functional concurrent regression (FCR) and functional principal component analysis models were approximately 6% lower when compared to linear mixed effects models. When we weighted subject-specific MSEs according to subject-specific growth rates during infancy, we found that FCR was the best performer in all scenarios. CONCLUSION: With this novel approach, we can quantitatively compare non-nested models and weight subgroups of interest to select the best performing growth model for a particular application or problem at hand.
format Online
Article
Text
id pubmed-5824542
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-58245422018-02-26 Novel metrics for growth model selection Grigsby, Matthew R. Di, Junrui Leroux, Andrew Zipunnikov, Vadim Xiao, Luo Crainiceanu, Ciprian Checkley, William Emerg Themes Epidemiol Research Article BACKGROUND: Literature surrounding the statistical modeling of childhood growth data involves a diverse set of potential models from which investigators can choose. However, the lack of a comprehensive framework for comparing non-nested models leads to difficulty in assessing model performance. This paper proposes a framework for comparing non-nested growth models using novel metrics of predictive accuracy based on modifications of the mean squared error criteria. METHODS: Three metrics were created: normalized, age-adjusted, and weighted mean squared error (MSE). Predictive performance metrics were used to compare linear mixed effects models and functional regression models. Prediction accuracy was assessed by partitioning the observed data into training and test datasets. This partitioning was constructed to assess prediction accuracy for backward (i.e., early growth), forward (i.e., late growth), in-range, and on new-individuals. Analyses were done with height measurements from 215 Peruvian children with data spanning from near birth to 2 years of age. RESULTS: Functional models outperformed linear mixed effects models in all scenarios tested. In particular, prediction errors for functional concurrent regression (FCR) and functional principal component analysis models were approximately 6% lower when compared to linear mixed effects models. When we weighted subject-specific MSEs according to subject-specific growth rates during infancy, we found that FCR was the best performer in all scenarios. CONCLUSION: With this novel approach, we can quantitatively compare non-nested models and weight subgroups of interest to select the best performing growth model for a particular application or problem at hand. BioMed Central 2018-02-23 /pmc/articles/PMC5824542/ /pubmed/29483933 http://dx.doi.org/10.1186/s12982-018-0072-z Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Grigsby, Matthew R.
Di, Junrui
Leroux, Andrew
Zipunnikov, Vadim
Xiao, Luo
Crainiceanu, Ciprian
Checkley, William
Novel metrics for growth model selection
title Novel metrics for growth model selection
title_full Novel metrics for growth model selection
title_fullStr Novel metrics for growth model selection
title_full_unstemmed Novel metrics for growth model selection
title_short Novel metrics for growth model selection
title_sort novel metrics for growth model selection
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5824542/
https://www.ncbi.nlm.nih.gov/pubmed/29483933
http://dx.doi.org/10.1186/s12982-018-0072-z
work_keys_str_mv AT grigsbymatthewr novelmetricsforgrowthmodelselection
AT dijunrui novelmetricsforgrowthmodelselection
AT lerouxandrew novelmetricsforgrowthmodelselection
AT zipunnikovvadim novelmetricsforgrowthmodelselection
AT xiaoluo novelmetricsforgrowthmodelselection
AT crainiceanuciprian novelmetricsforgrowthmodelselection
AT checkleywilliam novelmetricsforgrowthmodelselection