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Novel metrics for growth model selection
BACKGROUND: Literature surrounding the statistical modeling of childhood growth data involves a diverse set of potential models from which investigators can choose. However, the lack of a comprehensive framework for comparing non-nested models leads to difficulty in assessing model performance. This...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5824542/ https://www.ncbi.nlm.nih.gov/pubmed/29483933 http://dx.doi.org/10.1186/s12982-018-0072-z |
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author | Grigsby, Matthew R. Di, Junrui Leroux, Andrew Zipunnikov, Vadim Xiao, Luo Crainiceanu, Ciprian Checkley, William |
author_facet | Grigsby, Matthew R. Di, Junrui Leroux, Andrew Zipunnikov, Vadim Xiao, Luo Crainiceanu, Ciprian Checkley, William |
author_sort | Grigsby, Matthew R. |
collection | PubMed |
description | BACKGROUND: Literature surrounding the statistical modeling of childhood growth data involves a diverse set of potential models from which investigators can choose. However, the lack of a comprehensive framework for comparing non-nested models leads to difficulty in assessing model performance. This paper proposes a framework for comparing non-nested growth models using novel metrics of predictive accuracy based on modifications of the mean squared error criteria. METHODS: Three metrics were created: normalized, age-adjusted, and weighted mean squared error (MSE). Predictive performance metrics were used to compare linear mixed effects models and functional regression models. Prediction accuracy was assessed by partitioning the observed data into training and test datasets. This partitioning was constructed to assess prediction accuracy for backward (i.e., early growth), forward (i.e., late growth), in-range, and on new-individuals. Analyses were done with height measurements from 215 Peruvian children with data spanning from near birth to 2 years of age. RESULTS: Functional models outperformed linear mixed effects models in all scenarios tested. In particular, prediction errors for functional concurrent regression (FCR) and functional principal component analysis models were approximately 6% lower when compared to linear mixed effects models. When we weighted subject-specific MSEs according to subject-specific growth rates during infancy, we found that FCR was the best performer in all scenarios. CONCLUSION: With this novel approach, we can quantitatively compare non-nested models and weight subgroups of interest to select the best performing growth model for a particular application or problem at hand. |
format | Online Article Text |
id | pubmed-5824542 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-58245422018-02-26 Novel metrics for growth model selection Grigsby, Matthew R. Di, Junrui Leroux, Andrew Zipunnikov, Vadim Xiao, Luo Crainiceanu, Ciprian Checkley, William Emerg Themes Epidemiol Research Article BACKGROUND: Literature surrounding the statistical modeling of childhood growth data involves a diverse set of potential models from which investigators can choose. However, the lack of a comprehensive framework for comparing non-nested models leads to difficulty in assessing model performance. This paper proposes a framework for comparing non-nested growth models using novel metrics of predictive accuracy based on modifications of the mean squared error criteria. METHODS: Three metrics were created: normalized, age-adjusted, and weighted mean squared error (MSE). Predictive performance metrics were used to compare linear mixed effects models and functional regression models. Prediction accuracy was assessed by partitioning the observed data into training and test datasets. This partitioning was constructed to assess prediction accuracy for backward (i.e., early growth), forward (i.e., late growth), in-range, and on new-individuals. Analyses were done with height measurements from 215 Peruvian children with data spanning from near birth to 2 years of age. RESULTS: Functional models outperformed linear mixed effects models in all scenarios tested. In particular, prediction errors for functional concurrent regression (FCR) and functional principal component analysis models were approximately 6% lower when compared to linear mixed effects models. When we weighted subject-specific MSEs according to subject-specific growth rates during infancy, we found that FCR was the best performer in all scenarios. CONCLUSION: With this novel approach, we can quantitatively compare non-nested models and weight subgroups of interest to select the best performing growth model for a particular application or problem at hand. BioMed Central 2018-02-23 /pmc/articles/PMC5824542/ /pubmed/29483933 http://dx.doi.org/10.1186/s12982-018-0072-z Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Grigsby, Matthew R. Di, Junrui Leroux, Andrew Zipunnikov, Vadim Xiao, Luo Crainiceanu, Ciprian Checkley, William Novel metrics for growth model selection |
title | Novel metrics for growth model selection |
title_full | Novel metrics for growth model selection |
title_fullStr | Novel metrics for growth model selection |
title_full_unstemmed | Novel metrics for growth model selection |
title_short | Novel metrics for growth model selection |
title_sort | novel metrics for growth model selection |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5824542/ https://www.ncbi.nlm.nih.gov/pubmed/29483933 http://dx.doi.org/10.1186/s12982-018-0072-z |
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