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Horizontal transfer of code fragments between protocells can explain the origins of the genetic code without vertical descent

Theories of the origin of the genetic code typically appeal to natural selection and/or mutation of hereditable traits to explain its regularities and error robustness, yet the present translation system presupposes high-fidelity replication. Woese’s solution to this bootstrapping problem was to ass...

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Autores principales: Froese, Tom, Campos, Jorge I., Fujishima, Kosuke, Kiga, Daisuke, Virgo, Nathaniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5824800/
https://www.ncbi.nlm.nih.gov/pubmed/29476089
http://dx.doi.org/10.1038/s41598-018-21973-y
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author Froese, Tom
Campos, Jorge I.
Fujishima, Kosuke
Kiga, Daisuke
Virgo, Nathaniel
author_facet Froese, Tom
Campos, Jorge I.
Fujishima, Kosuke
Kiga, Daisuke
Virgo, Nathaniel
author_sort Froese, Tom
collection PubMed
description Theories of the origin of the genetic code typically appeal to natural selection and/or mutation of hereditable traits to explain its regularities and error robustness, yet the present translation system presupposes high-fidelity replication. Woese’s solution to this bootstrapping problem was to assume that code optimization had played a key role in reducing the effect of errors caused by the early translation system. He further conjectured that initially evolution was dominated by horizontal exchange of cellular components among loosely organized protocells (“progenotes”), rather than by vertical transmission of genes. Here we simulated such communal evolution based on horizontal transfer of code fragments, possibly involving pairs of tRNAs and their cognate aminoacyl tRNA synthetases or a precursor tRNA ribozyme capable of catalysing its own aminoacylation, by using an iterated learning model. This is the first model to confirm Woese’s conjecture that regularity, optimality, and (near) universality could have emerged via horizontal interactions alone.
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spelling pubmed-58248002018-03-01 Horizontal transfer of code fragments between protocells can explain the origins of the genetic code without vertical descent Froese, Tom Campos, Jorge I. Fujishima, Kosuke Kiga, Daisuke Virgo, Nathaniel Sci Rep Article Theories of the origin of the genetic code typically appeal to natural selection and/or mutation of hereditable traits to explain its regularities and error robustness, yet the present translation system presupposes high-fidelity replication. Woese’s solution to this bootstrapping problem was to assume that code optimization had played a key role in reducing the effect of errors caused by the early translation system. He further conjectured that initially evolution was dominated by horizontal exchange of cellular components among loosely organized protocells (“progenotes”), rather than by vertical transmission of genes. Here we simulated such communal evolution based on horizontal transfer of code fragments, possibly involving pairs of tRNAs and their cognate aminoacyl tRNA synthetases or a precursor tRNA ribozyme capable of catalysing its own aminoacylation, by using an iterated learning model. This is the first model to confirm Woese’s conjecture that regularity, optimality, and (near) universality could have emerged via horizontal interactions alone. Nature Publishing Group UK 2018-02-23 /pmc/articles/PMC5824800/ /pubmed/29476089 http://dx.doi.org/10.1038/s41598-018-21973-y Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Froese, Tom
Campos, Jorge I.
Fujishima, Kosuke
Kiga, Daisuke
Virgo, Nathaniel
Horizontal transfer of code fragments between protocells can explain the origins of the genetic code without vertical descent
title Horizontal transfer of code fragments between protocells can explain the origins of the genetic code without vertical descent
title_full Horizontal transfer of code fragments between protocells can explain the origins of the genetic code without vertical descent
title_fullStr Horizontal transfer of code fragments between protocells can explain the origins of the genetic code without vertical descent
title_full_unstemmed Horizontal transfer of code fragments between protocells can explain the origins of the genetic code without vertical descent
title_short Horizontal transfer of code fragments between protocells can explain the origins of the genetic code without vertical descent
title_sort horizontal transfer of code fragments between protocells can explain the origins of the genetic code without vertical descent
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5824800/
https://www.ncbi.nlm.nih.gov/pubmed/29476089
http://dx.doi.org/10.1038/s41598-018-21973-y
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