Cargando…

Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens

The growth and development of skeletal muscle is regulated by proteins as well as non-coding RNAs. Circular RNAs (circRNAs) are universally expressed in various tissues and cell types, and regulate gene expression in eukaryotes. To identify the circRNAs during chicken embryonic skeletal muscle devel...

Descripción completa

Detalles Bibliográficos
Autores principales: Ouyang, Hongjia, Chen, Xiaolan, Wang, Zhijun, Yu, Jiao, Jia, Xinzheng, Li, Zhenhui, Luo, Wei, Abdalla, Bahareldin Ali, Jebessa, Endashaw, Nie, Qinghua, Zhang, Xiquan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5824844/
https://www.ncbi.nlm.nih.gov/pubmed/29036326
http://dx.doi.org/10.1093/dnares/dsx039
_version_ 1783302095809544192
author Ouyang, Hongjia
Chen, Xiaolan
Wang, Zhijun
Yu, Jiao
Jia, Xinzheng
Li, Zhenhui
Luo, Wei
Abdalla, Bahareldin Ali
Jebessa, Endashaw
Nie, Qinghua
Zhang, Xiquan
author_facet Ouyang, Hongjia
Chen, Xiaolan
Wang, Zhijun
Yu, Jiao
Jia, Xinzheng
Li, Zhenhui
Luo, Wei
Abdalla, Bahareldin Ali
Jebessa, Endashaw
Nie, Qinghua
Zhang, Xiquan
author_sort Ouyang, Hongjia
collection PubMed
description The growth and development of skeletal muscle is regulated by proteins as well as non-coding RNAs. Circular RNAs (circRNAs) are universally expressed in various tissues and cell types, and regulate gene expression in eukaryotes. To identify the circRNAs during chicken embryonic skeletal muscle development, leg muscles of female Xinghua (XH) chicken at three developmental time points 11 embryo age (E11), 16 embryo age (E16) and 1 day post hatch (P1) were performed RNA sequencing. We identified 13,377 circRNAs with 3,036 abundantly expressed and most were derived from coding exons. A total of 462 differentially expressed circRNAs were identified (fold change > 2; q-value < 0.05). Parental genes of differentially expressed circRNAs were related to muscle biological processes. There were 946 exonic circRNAs have been found that harbored one or more miRNA-binding site for 150 known miRNAs. We validated that circRBFOX2s promoted cell proliferation through interacted with miR-206. These data collectively indicate that circRNAs are abundant and dynamically expressed during embryonic muscle development and could play key roles through sequestering miRNAs as well as other functions.
format Online
Article
Text
id pubmed-5824844
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-58248442018-02-28 Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens Ouyang, Hongjia Chen, Xiaolan Wang, Zhijun Yu, Jiao Jia, Xinzheng Li, Zhenhui Luo, Wei Abdalla, Bahareldin Ali Jebessa, Endashaw Nie, Qinghua Zhang, Xiquan DNA Res Full Papers The growth and development of skeletal muscle is regulated by proteins as well as non-coding RNAs. Circular RNAs (circRNAs) are universally expressed in various tissues and cell types, and regulate gene expression in eukaryotes. To identify the circRNAs during chicken embryonic skeletal muscle development, leg muscles of female Xinghua (XH) chicken at three developmental time points 11 embryo age (E11), 16 embryo age (E16) and 1 day post hatch (P1) were performed RNA sequencing. We identified 13,377 circRNAs with 3,036 abundantly expressed and most were derived from coding exons. A total of 462 differentially expressed circRNAs were identified (fold change > 2; q-value < 0.05). Parental genes of differentially expressed circRNAs were related to muscle biological processes. There were 946 exonic circRNAs have been found that harbored one or more miRNA-binding site for 150 known miRNAs. We validated that circRBFOX2s promoted cell proliferation through interacted with miR-206. These data collectively indicate that circRNAs are abundant and dynamically expressed during embryonic muscle development and could play key roles through sequestering miRNAs as well as other functions. Oxford University Press 2018-02 2017-10-03 /pmc/articles/PMC5824844/ /pubmed/29036326 http://dx.doi.org/10.1093/dnares/dsx039 Text en © The Author 2017. Published by Oxford University Press on behalf of Kazusa DNA Research Institute. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Full Papers
Ouyang, Hongjia
Chen, Xiaolan
Wang, Zhijun
Yu, Jiao
Jia, Xinzheng
Li, Zhenhui
Luo, Wei
Abdalla, Bahareldin Ali
Jebessa, Endashaw
Nie, Qinghua
Zhang, Xiquan
Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens
title Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens
title_full Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens
title_fullStr Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens
title_full_unstemmed Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens
title_short Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens
title_sort circular rnas are abundant and dynamically expressed during embryonic muscle development in chickens
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5824844/
https://www.ncbi.nlm.nih.gov/pubmed/29036326
http://dx.doi.org/10.1093/dnares/dsx039
work_keys_str_mv AT ouyanghongjia circularrnasareabundantanddynamicallyexpressedduringembryonicmuscledevelopmentinchickens
AT chenxiaolan circularrnasareabundantanddynamicallyexpressedduringembryonicmuscledevelopmentinchickens
AT wangzhijun circularrnasareabundantanddynamicallyexpressedduringembryonicmuscledevelopmentinchickens
AT yujiao circularrnasareabundantanddynamicallyexpressedduringembryonicmuscledevelopmentinchickens
AT jiaxinzheng circularrnasareabundantanddynamicallyexpressedduringembryonicmuscledevelopmentinchickens
AT lizhenhui circularrnasareabundantanddynamicallyexpressedduringembryonicmuscledevelopmentinchickens
AT luowei circularrnasareabundantanddynamicallyexpressedduringembryonicmuscledevelopmentinchickens
AT abdallabahareldinali circularrnasareabundantanddynamicallyexpressedduringembryonicmuscledevelopmentinchickens
AT jebessaendashaw circularrnasareabundantanddynamicallyexpressedduringembryonicmuscledevelopmentinchickens
AT nieqinghua circularrnasareabundantanddynamicallyexpressedduringembryonicmuscledevelopmentinchickens
AT zhangxiquan circularrnasareabundantanddynamicallyexpressedduringembryonicmuscledevelopmentinchickens