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Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens
The growth and development of skeletal muscle is regulated by proteins as well as non-coding RNAs. Circular RNAs (circRNAs) are universally expressed in various tissues and cell types, and regulate gene expression in eukaryotes. To identify the circRNAs during chicken embryonic skeletal muscle devel...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5824844/ https://www.ncbi.nlm.nih.gov/pubmed/29036326 http://dx.doi.org/10.1093/dnares/dsx039 |
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author | Ouyang, Hongjia Chen, Xiaolan Wang, Zhijun Yu, Jiao Jia, Xinzheng Li, Zhenhui Luo, Wei Abdalla, Bahareldin Ali Jebessa, Endashaw Nie, Qinghua Zhang, Xiquan |
author_facet | Ouyang, Hongjia Chen, Xiaolan Wang, Zhijun Yu, Jiao Jia, Xinzheng Li, Zhenhui Luo, Wei Abdalla, Bahareldin Ali Jebessa, Endashaw Nie, Qinghua Zhang, Xiquan |
author_sort | Ouyang, Hongjia |
collection | PubMed |
description | The growth and development of skeletal muscle is regulated by proteins as well as non-coding RNAs. Circular RNAs (circRNAs) are universally expressed in various tissues and cell types, and regulate gene expression in eukaryotes. To identify the circRNAs during chicken embryonic skeletal muscle development, leg muscles of female Xinghua (XH) chicken at three developmental time points 11 embryo age (E11), 16 embryo age (E16) and 1 day post hatch (P1) were performed RNA sequencing. We identified 13,377 circRNAs with 3,036 abundantly expressed and most were derived from coding exons. A total of 462 differentially expressed circRNAs were identified (fold change > 2; q-value < 0.05). Parental genes of differentially expressed circRNAs were related to muscle biological processes. There were 946 exonic circRNAs have been found that harbored one or more miRNA-binding site for 150 known miRNAs. We validated that circRBFOX2s promoted cell proliferation through interacted with miR-206. These data collectively indicate that circRNAs are abundant and dynamically expressed during embryonic muscle development and could play key roles through sequestering miRNAs as well as other functions. |
format | Online Article Text |
id | pubmed-5824844 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-58248442018-02-28 Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens Ouyang, Hongjia Chen, Xiaolan Wang, Zhijun Yu, Jiao Jia, Xinzheng Li, Zhenhui Luo, Wei Abdalla, Bahareldin Ali Jebessa, Endashaw Nie, Qinghua Zhang, Xiquan DNA Res Full Papers The growth and development of skeletal muscle is regulated by proteins as well as non-coding RNAs. Circular RNAs (circRNAs) are universally expressed in various tissues and cell types, and regulate gene expression in eukaryotes. To identify the circRNAs during chicken embryonic skeletal muscle development, leg muscles of female Xinghua (XH) chicken at three developmental time points 11 embryo age (E11), 16 embryo age (E16) and 1 day post hatch (P1) were performed RNA sequencing. We identified 13,377 circRNAs with 3,036 abundantly expressed and most were derived from coding exons. A total of 462 differentially expressed circRNAs were identified (fold change > 2; q-value < 0.05). Parental genes of differentially expressed circRNAs were related to muscle biological processes. There were 946 exonic circRNAs have been found that harbored one or more miRNA-binding site for 150 known miRNAs. We validated that circRBFOX2s promoted cell proliferation through interacted with miR-206. These data collectively indicate that circRNAs are abundant and dynamically expressed during embryonic muscle development and could play key roles through sequestering miRNAs as well as other functions. Oxford University Press 2018-02 2017-10-03 /pmc/articles/PMC5824844/ /pubmed/29036326 http://dx.doi.org/10.1093/dnares/dsx039 Text en © The Author 2017. Published by Oxford University Press on behalf of Kazusa DNA Research Institute. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Full Papers Ouyang, Hongjia Chen, Xiaolan Wang, Zhijun Yu, Jiao Jia, Xinzheng Li, Zhenhui Luo, Wei Abdalla, Bahareldin Ali Jebessa, Endashaw Nie, Qinghua Zhang, Xiquan Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens |
title | Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens |
title_full | Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens |
title_fullStr | Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens |
title_full_unstemmed | Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens |
title_short | Circular RNAs are abundant and dynamically expressed during embryonic muscle development in chickens |
title_sort | circular rnas are abundant and dynamically expressed during embryonic muscle development in chickens |
topic | Full Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5824844/ https://www.ncbi.nlm.nih.gov/pubmed/29036326 http://dx.doi.org/10.1093/dnares/dsx039 |
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