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In silico structural and functional prediction of African swine fever virus protein-B263R reveals features of a TATA-binding protein

African swine fever virus (ASFV) is the etiological agent of ASF, a fatal hemorrhagic fever that affects domestic pigs. There is currently no vaccine against ASFV, making it a significant threat to the pork industry. The ASFV genome sequence has been published; however, about half of ASFV open readi...

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Autores principales: Kinyanyi, Dickson, Obiero, George, Obiero, George F.O., Amwayi, Peris, Mwaniki, Stephen, Wamalwa, Mark
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5825884/
https://www.ncbi.nlm.nih.gov/pubmed/29492339
http://dx.doi.org/10.7717/peerj.4396
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author Kinyanyi, Dickson
Obiero, George
Obiero, George F.O.
Amwayi, Peris
Mwaniki, Stephen
Wamalwa, Mark
author_facet Kinyanyi, Dickson
Obiero, George
Obiero, George F.O.
Amwayi, Peris
Mwaniki, Stephen
Wamalwa, Mark
author_sort Kinyanyi, Dickson
collection PubMed
description African swine fever virus (ASFV) is the etiological agent of ASF, a fatal hemorrhagic fever that affects domestic pigs. There is currently no vaccine against ASFV, making it a significant threat to the pork industry. The ASFV genome sequence has been published; however, about half of ASFV open reading frames have not been characterized in terms of their structure and function despite being essential for our understanding of ASFV pathogenicity. The present study reports the three-dimensional structure and function of uncharacterized protein, pB263R (NP_042780.1), an open reading frame found in all ASFV strains. Sequence-based profiling and hidden Markov model search methods were used to identify remote pB263R homologs. Iterative Threading ASSEmbly Refinement (I-TASSER) was used to model the three-dimensional structure of pB263R. The posterior probability of fold family assignment was calculated using TM-fold, and biological function was assigned using TM-site, RaptorXBinding, Gene Ontology, and TM-align. Our results suggests that pB263R has the features of a TATA-binding protein and is thus likely to be involved in viral gene transcription.
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spelling pubmed-58258842018-02-28 In silico structural and functional prediction of African swine fever virus protein-B263R reveals features of a TATA-binding protein Kinyanyi, Dickson Obiero, George Obiero, George F.O. Amwayi, Peris Mwaniki, Stephen Wamalwa, Mark PeerJ Biochemistry African swine fever virus (ASFV) is the etiological agent of ASF, a fatal hemorrhagic fever that affects domestic pigs. There is currently no vaccine against ASFV, making it a significant threat to the pork industry. The ASFV genome sequence has been published; however, about half of ASFV open reading frames have not been characterized in terms of their structure and function despite being essential for our understanding of ASFV pathogenicity. The present study reports the three-dimensional structure and function of uncharacterized protein, pB263R (NP_042780.1), an open reading frame found in all ASFV strains. Sequence-based profiling and hidden Markov model search methods were used to identify remote pB263R homologs. Iterative Threading ASSEmbly Refinement (I-TASSER) was used to model the three-dimensional structure of pB263R. The posterior probability of fold family assignment was calculated using TM-fold, and biological function was assigned using TM-site, RaptorXBinding, Gene Ontology, and TM-align. Our results suggests that pB263R has the features of a TATA-binding protein and is thus likely to be involved in viral gene transcription. PeerJ Inc. 2018-02-22 /pmc/articles/PMC5825884/ /pubmed/29492339 http://dx.doi.org/10.7717/peerj.4396 Text en ©2018 Kinyanyi et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Biochemistry
Kinyanyi, Dickson
Obiero, George
Obiero, George F.O.
Amwayi, Peris
Mwaniki, Stephen
Wamalwa, Mark
In silico structural and functional prediction of African swine fever virus protein-B263R reveals features of a TATA-binding protein
title In silico structural and functional prediction of African swine fever virus protein-B263R reveals features of a TATA-binding protein
title_full In silico structural and functional prediction of African swine fever virus protein-B263R reveals features of a TATA-binding protein
title_fullStr In silico structural and functional prediction of African swine fever virus protein-B263R reveals features of a TATA-binding protein
title_full_unstemmed In silico structural and functional prediction of African swine fever virus protein-B263R reveals features of a TATA-binding protein
title_short In silico structural and functional prediction of African swine fever virus protein-B263R reveals features of a TATA-binding protein
title_sort in silico structural and functional prediction of african swine fever virus protein-b263r reveals features of a tata-binding protein
topic Biochemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5825884/
https://www.ncbi.nlm.nih.gov/pubmed/29492339
http://dx.doi.org/10.7717/peerj.4396
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