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Genome wide in vivo mouse screen data from studies to assess host regulation of metastatic colonisation

The process of metastasis is a multi-stage cascade with prior studies suggesting that the colonisation of the secondary site is the rate limiting step. This process involves contributions from the tumour cells and also non-tumour intrinsic factors such as the stroma and the haematopoietic system. In...

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Autores principales: van der Weyden, Louise, Karp, Natasha A., Swiatkowska, Agnieszka, Adams, David J., Speak, Anneliese O.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5827107/
https://www.ncbi.nlm.nih.gov/pubmed/28895944
http://dx.doi.org/10.1038/sdata.2017.129
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author van der Weyden, Louise
Karp, Natasha A.
Swiatkowska, Agnieszka
Adams, David J.
Speak, Anneliese O.
author_facet van der Weyden, Louise
Karp, Natasha A.
Swiatkowska, Agnieszka
Adams, David J.
Speak, Anneliese O.
author_sort van der Weyden, Louise
collection PubMed
description The process of metastasis is a multi-stage cascade with prior studies suggesting that the colonisation of the secondary site is the rate limiting step. This process involves contributions from the tumour cells and also non-tumour intrinsic factors such as the stroma and the haematopoietic system. In this study, we present data from screening 810 genetically-modified mouse lines with the experimental metastasis assay where intravenous delivery of murine metastatic melanoma B16-F10 cells was used to assess the formation of pulmonary metastasic foci. To date, these data have been studied with a two-step process cumulating in an integrative data analysis to identify genes controlling metastatic colonisation. We present the raw data, and a description to support fresh analyses where researchers can look both within and across gene sets to further elucidate process that regulate metastatic colonisation.
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spelling pubmed-58271072018-03-19 Genome wide in vivo mouse screen data from studies to assess host regulation of metastatic colonisation van der Weyden, Louise Karp, Natasha A. Swiatkowska, Agnieszka Adams, David J. Speak, Anneliese O. Sci Data Data Descriptor The process of metastasis is a multi-stage cascade with prior studies suggesting that the colonisation of the secondary site is the rate limiting step. This process involves contributions from the tumour cells and also non-tumour intrinsic factors such as the stroma and the haematopoietic system. In this study, we present data from screening 810 genetically-modified mouse lines with the experimental metastasis assay where intravenous delivery of murine metastatic melanoma B16-F10 cells was used to assess the formation of pulmonary metastasic foci. To date, these data have been studied with a two-step process cumulating in an integrative data analysis to identify genes controlling metastatic colonisation. We present the raw data, and a description to support fresh analyses where researchers can look both within and across gene sets to further elucidate process that regulate metastatic colonisation. Nature Publishing Group 2017-09-12 /pmc/articles/PMC5827107/ /pubmed/28895944 http://dx.doi.org/10.1038/sdata.2017.129 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article.
spellingShingle Data Descriptor
van der Weyden, Louise
Karp, Natasha A.
Swiatkowska, Agnieszka
Adams, David J.
Speak, Anneliese O.
Genome wide in vivo mouse screen data from studies to assess host regulation of metastatic colonisation
title Genome wide in vivo mouse screen data from studies to assess host regulation of metastatic colonisation
title_full Genome wide in vivo mouse screen data from studies to assess host regulation of metastatic colonisation
title_fullStr Genome wide in vivo mouse screen data from studies to assess host regulation of metastatic colonisation
title_full_unstemmed Genome wide in vivo mouse screen data from studies to assess host regulation of metastatic colonisation
title_short Genome wide in vivo mouse screen data from studies to assess host regulation of metastatic colonisation
title_sort genome wide in vivo mouse screen data from studies to assess host regulation of metastatic colonisation
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5827107/
https://www.ncbi.nlm.nih.gov/pubmed/28895944
http://dx.doi.org/10.1038/sdata.2017.129
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