Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb

The draft genome assembly of the Wolbachia endosymbiont of Wuchereria bancrofti (wWb) consists of 1060 850 bp in 100 contigs and contains 961 ORFs, with a single copy of the 5S rRNA, 16S rRNA and 23S rRNA and each of the 34 tRNA genes. Phylogenetic core genome analyses show wWb to cluster with other...

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Autores principales: Chung, Matthew, Small, Scott T, Serre, David, Zimmerman, Peter A, Dunning Hotopp, Julie C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Shortomics
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5827699/
https://www.ncbi.nlm.nih.gov/pubmed/29099918
http://dx.doi.org/10.1093/femspd/ftx115
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author Chung, Matthew
Small, Scott T
Serre, David
Zimmerman, Peter A
Dunning Hotopp, Julie C
author_facet Chung, Matthew
Small, Scott T
Serre, David
Zimmerman, Peter A
Dunning Hotopp, Julie C
author_sort Chung, Matthew
collection PubMed
description The draft genome assembly of the Wolbachia endosymbiont of Wuchereria bancrofti (wWb) consists of 1060 850 bp in 100 contigs and contains 961 ORFs, with a single copy of the 5S rRNA, 16S rRNA and 23S rRNA and each of the 34 tRNA genes. Phylogenetic core genome analyses show wWb to cluster with other strains in supergroup D of the Wolbachia phylogeny, while being most closely related to the Wolbachia endosymbiont of Brugia malayi strain TRS (wBm). The wWb and wBm genomes share 779 orthologous clusters with wWb having 101 unclustered genes and wBm having 23 unclustered genes. The higher number of unclustered genes in the wWb genome likely reflects the fragmentation of the draft genome.
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spelling pubmed-58276992018-03-05 Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb Chung, Matthew Small, Scott T Serre, David Zimmerman, Peter A Dunning Hotopp, Julie C Pathog Dis Shortomics The draft genome assembly of the Wolbachia endosymbiont of Wuchereria bancrofti (wWb) consists of 1060 850 bp in 100 contigs and contains 961 ORFs, with a single copy of the 5S rRNA, 16S rRNA and 23S rRNA and each of the 34 tRNA genes. Phylogenetic core genome analyses show wWb to cluster with other strains in supergroup D of the Wolbachia phylogeny, while being most closely related to the Wolbachia endosymbiont of Brugia malayi strain TRS (wBm). The wWb and wBm genomes share 779 orthologous clusters with wWb having 101 unclustered genes and wBm having 23 unclustered genes. The higher number of unclustered genes in the wWb genome likely reflects the fragmentation of the draft genome. Oxford University Press 2017-11-01 /pmc/articles/PMC5827699/ /pubmed/29099918 http://dx.doi.org/10.1093/femspd/ftx115 Text en © FEMS 2017. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Shortomics
Chung, Matthew
Small, Scott T
Serre, David
Zimmerman, Peter A
Dunning Hotopp, Julie C
Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb
title Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb
title_full Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb
title_fullStr Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb
title_full_unstemmed Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb
title_short Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb
title_sort draft genome sequence of the wolbachia endosymbiont of wuchereria bancrofti wwb
topic Shortomics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5827699/
https://www.ncbi.nlm.nih.gov/pubmed/29099918
http://dx.doi.org/10.1093/femspd/ftx115
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