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Potential Diagnostic Power of Blood Circular RNA Expression in Active Pulmonary Tuberculosis

BACKGROUND: Circular RNAs (circRNAs) are a class of novel RNAs with important biological functions, and aberrant expression of circRNAs has been implicated in human diseases. However, the feasibility of using blood circRNAs as disease biomarkers is largely unknown. METHODS: We explored the potential...

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Autores principales: Qian, Zhongqing, Liu, Hui, Li, Musheng, Shi, Junchao, Li, Na, Zhang, Yao, Zhang, Xiaojie, Lv, Jingzhu, Xie, Xueying, Bai, Yunfei, Ge, Qinyu, Ko, Eun-A, Tang, Haiyang, Wang, Ting, Wang, Xiaojing, Wang, Zhaohua, Zhou, Tong, Gu, Wanjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5828303/
https://www.ncbi.nlm.nih.gov/pubmed/29248507
http://dx.doi.org/10.1016/j.ebiom.2017.12.007
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author Qian, Zhongqing
Liu, Hui
Li, Musheng
Shi, Junchao
Li, Na
Zhang, Yao
Zhang, Xiaojie
Lv, Jingzhu
Xie, Xueying
Bai, Yunfei
Ge, Qinyu
Ko, Eun-A
Tang, Haiyang
Wang, Ting
Wang, Xiaojing
Wang, Zhaohua
Zhou, Tong
Gu, Wanjun
author_facet Qian, Zhongqing
Liu, Hui
Li, Musheng
Shi, Junchao
Li, Na
Zhang, Yao
Zhang, Xiaojie
Lv, Jingzhu
Xie, Xueying
Bai, Yunfei
Ge, Qinyu
Ko, Eun-A
Tang, Haiyang
Wang, Ting
Wang, Xiaojing
Wang, Zhaohua
Zhou, Tong
Gu, Wanjun
author_sort Qian, Zhongqing
collection PubMed
description BACKGROUND: Circular RNAs (circRNAs) are a class of novel RNAs with important biological functions, and aberrant expression of circRNAs has been implicated in human diseases. However, the feasibility of using blood circRNAs as disease biomarkers is largely unknown. METHODS: We explored the potential of using human peripheral blood mononuclear cell (PBMC) circRNAs as marker molecules to diagnose active pulmonary tuberculosis (TB). FINDINGS: First, we demonstrated that circRNAs are widely expressed in human PBMCs and that many are abundant enough to be detected. Second, we found that the magnitude of PBMC circRNAs in TB patients was higher than that in the paired healthy controls. Compared with host linear transcripts, the circRNAs within several pathways are disproportionately upregulated in active TB patients, including “Cytokine-cytokine receptor interaction”, “Chemokine signaling pathway”, “Neurotrophin signaling pathway”, and “Bacterial invasion of epithelial cells”. Based on the differentially expressed circRNAs within these pathways, we developed a PBMC circRNA-based molecular signature differentiating active TB patients from healthy controls. We validated the classification power of the PBMC circRNA signature in an independent cohort with the area under the receiver operating characteristic curve (AUC) at 0.946. INTERPRETATION: Our results suggest that PBMC circRNAs are potentially reliable marker molecules in TB diagnosis.
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spelling pubmed-58283032018-02-28 Potential Diagnostic Power of Blood Circular RNA Expression in Active Pulmonary Tuberculosis Qian, Zhongqing Liu, Hui Li, Musheng Shi, Junchao Li, Na Zhang, Yao Zhang, Xiaojie Lv, Jingzhu Xie, Xueying Bai, Yunfei Ge, Qinyu Ko, Eun-A Tang, Haiyang Wang, Ting Wang, Xiaojing Wang, Zhaohua Zhou, Tong Gu, Wanjun EBioMedicine Research Paper BACKGROUND: Circular RNAs (circRNAs) are a class of novel RNAs with important biological functions, and aberrant expression of circRNAs has been implicated in human diseases. However, the feasibility of using blood circRNAs as disease biomarkers is largely unknown. METHODS: We explored the potential of using human peripheral blood mononuclear cell (PBMC) circRNAs as marker molecules to diagnose active pulmonary tuberculosis (TB). FINDINGS: First, we demonstrated that circRNAs are widely expressed in human PBMCs and that many are abundant enough to be detected. Second, we found that the magnitude of PBMC circRNAs in TB patients was higher than that in the paired healthy controls. Compared with host linear transcripts, the circRNAs within several pathways are disproportionately upregulated in active TB patients, including “Cytokine-cytokine receptor interaction”, “Chemokine signaling pathway”, “Neurotrophin signaling pathway”, and “Bacterial invasion of epithelial cells”. Based on the differentially expressed circRNAs within these pathways, we developed a PBMC circRNA-based molecular signature differentiating active TB patients from healthy controls. We validated the classification power of the PBMC circRNA signature in an independent cohort with the area under the receiver operating characteristic curve (AUC) at 0.946. INTERPRETATION: Our results suggest that PBMC circRNAs are potentially reliable marker molecules in TB diagnosis. Elsevier 2017-12-08 /pmc/articles/PMC5828303/ /pubmed/29248507 http://dx.doi.org/10.1016/j.ebiom.2017.12.007 Text en © 2017 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Paper
Qian, Zhongqing
Liu, Hui
Li, Musheng
Shi, Junchao
Li, Na
Zhang, Yao
Zhang, Xiaojie
Lv, Jingzhu
Xie, Xueying
Bai, Yunfei
Ge, Qinyu
Ko, Eun-A
Tang, Haiyang
Wang, Ting
Wang, Xiaojing
Wang, Zhaohua
Zhou, Tong
Gu, Wanjun
Potential Diagnostic Power of Blood Circular RNA Expression in Active Pulmonary Tuberculosis
title Potential Diagnostic Power of Blood Circular RNA Expression in Active Pulmonary Tuberculosis
title_full Potential Diagnostic Power of Blood Circular RNA Expression in Active Pulmonary Tuberculosis
title_fullStr Potential Diagnostic Power of Blood Circular RNA Expression in Active Pulmonary Tuberculosis
title_full_unstemmed Potential Diagnostic Power of Blood Circular RNA Expression in Active Pulmonary Tuberculosis
title_short Potential Diagnostic Power of Blood Circular RNA Expression in Active Pulmonary Tuberculosis
title_sort potential diagnostic power of blood circular rna expression in active pulmonary tuberculosis
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5828303/
https://www.ncbi.nlm.nih.gov/pubmed/29248507
http://dx.doi.org/10.1016/j.ebiom.2017.12.007
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